RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 LIMS3P0CW19 117 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 LIMS4P0CW20 117 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 CRISP2P16562 243 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 HIST1H1TP22492 207 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 CKS1BP61024 79 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 RRAS2P62070 204 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 SLC35B1P78383 322 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 EDDM3AQ14507 147 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 OXA1LQ15070 435 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 ARHGAP11BQ3KRB8 267 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 PARP15Q460N3 678 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 TMEM97Q5BJF2 176 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 TMEM128Q5BJH2 165 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 TFDP3Q5H9I0 405 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 OR10J3Q5JRS4 329 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 IGFL3Q6UXB1 125 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 TOMM20LQ6UXN7 152 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 SLC16A13Q7RTY0 426 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 FAM19A5Q7Z5A7 132 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 C10orf107Q8IVU9 208 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 CPNE9Q8IYJ1 553 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 BLIDQ8IZY5 108 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 DAW1Q8N136 415 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 ST6GALNAC3Q8NDV1 305 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 OR13C4Q8NGS5 318 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 OR8U1Q8NH10 309 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 SFXN5Q8TD22 340 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 SKA2Q8WVK7 121 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 FGF11Q92914 225 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 IMP4Q96G21 291 aaKnown RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 ATP5SQ99766 215 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 CCDC32Q9BV29 185 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 CHST5Q9GZS9 411 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 RPF2Q9H7B2 306 aaKnown RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 NHEJ1Q9H9Q4 299 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 LGALS13Q9UHV8 139 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 ZNF223Q9UK11 482 aaPredicted RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 RPL36Q9Y3U8 105 aaKnown RBP2.9□□□□□ -1.95
NUP88-208ENST00000574087 HSPE1-MOB4S4R3N1 261 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 ASTN1O14525 1302 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 PTPRJQ12913 1337 aa2.9□□□□□ -1.95
NUP88-208ENST00000574087 TUBGCP6Q96RT7 1819 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 A0A087WXM4 84 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 A0A0G2JMP0 313 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 IGHV3-64DA0A0J9YX35 117 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 A0A0X1KG70 313 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ISPDA4D126 451 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TMEM150BA6NC51 233 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 H7C2Y5 167 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 I3L4J1 428 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 AGPAT2O15120 278 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 RAD51CO43502 376 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ORC5O43913 435 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 CDC40O60508 579 aaKnown RBP eCLIP2.89□□□□□ -1.95
NUP88-208ENST00000574087 FOXH1O75593 365 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 CNMDO75829 334 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TRAPPC6AO75865 159 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TNFSF13O75888 250 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 IFNA17P01571 189 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ARG1P05089 322 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 CRYGDP07320 174 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 GIPP09681 153 aaPredicted RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 OR56A5P0C7T3 313 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 GCAP28676 217 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 QARSP47897 775 aaKnown RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 SULT1A1P50225 295 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 SULT1A2P50226 295 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 RORCP51449 518 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TDGF1P3P51864 188 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 SLC18A1P54219 525 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 DLX6P56179 175 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ZNF121P58317 390 aaPredicted RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 MAXP61244 160 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ARHGEF5Q12774 1597 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TWF1Q12792 350 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 PNOCQ13519 176 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 EBI3Q14213 229 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 RSU1Q15404 277 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 SHHQ15465 462 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TTLL9Q3SXZ7 439 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 HSD17B12Q53GQ0 312 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TMEM78Q5T7P6 136 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 NANOGP8Q6NSW7 305 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 XKRXQ6PP77 449 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 MBOAT2Q6ZWT7 520 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ZNF571Q7Z3V5 609 aaPredicted RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 C9orf62Q8N4C0 152 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 MS4A15Q8N5U1 240 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 NPBQ8NG41 125 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 OR4M2Q8NGB6 313 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 OR6K6Q8NGW6 343 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 OR6N1Q8NGY5 312 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 GNPDA2Q8TDQ7 276 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ZFP90Q8TF47 636 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 EEF1AKMT1Q8WVE0 214 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 NDRG1Q92597 394 aaKnown RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 ARPC1AQ92747 370 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 DNAJC19Q96DA6 116 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 SEH1LQ96EE3 360 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 NARS2Q96I59 477 aaKnown RBP2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms