RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 PDLIM4P50479 330 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 Q3ZCU0 254 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 ARPC5LQ9BPX5 153 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 BARX1Q9HBU1 254 aaPredicted RBP8.63□□□□□ -1.03
SMG6-213ENST00000573166 TMEM106BQ9NUM4 274 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 WNT9BO14905 357 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 NXPH3O95157 252 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 CLDN1O95832 211 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 PMELP40967 661 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 RPL35P42766 123 aaKnown RBP8.63□□□□□ -1.03
SMG6-213ENST00000573166 HOXA1P49639 335 aaPredicted RBP8.63□□□□□ -1.03
SMG6-213ENST00000573166 NKX6-1P78426 367 aaPredicted RBP8.63□□□□□ -1.03
SMG6-213ENST00000573166 TLE4Q04727 773 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 MPPED2Q15777 294 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 FAM201AQ5SY85 155 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 SSC4DQ8WTU2 575 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 ZNF251Q9BRH9 671 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 PIMREGQ9BSJ6 248 aa8.63□□□□□ -1.03
SMG6-213ENST00000573166 RHBDL1O75783 438 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 OMGP23515 440 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 UQCRFS1P47985 274 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 RAB7AP51149 207 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 ZNF616Q08AN1 781 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 TMEM268Q5VZI3 342 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 C17orf107Q6ZR85 190 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 AQP3Q92482 292 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 EIF5A2Q9GZV4 153 aaKnown RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 CEACAM3P40198 252 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 GNB1P62873 340 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 IL24Q13007 206 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 CALHM1Q8IU99 346 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 YIPF5Q969M3 257 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 OR2D2Q9H210 308 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 LRP4O75096 1905 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 EML5Q05BV3 1969 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 J3QKU1 62 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 CCSO14618 274 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 FASNP49327 2511 aaKnown RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 CD276Q5ZPR3 534 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 FAHD2BQ6P2I3 314 aaPredicted RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 LRP11Q86VZ4 500 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 SAXO1Q8IYX7 474 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 NEU4Q8WWR8 484 aaPredicted RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 FAHD2AQ96GK7 314 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 SNX22Q96L94 193 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 CBLN4Q9NTU7 201 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 SDHAF2Q9NX18 166 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 KIAA2026Q5HYC2 2103 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 J3QRE1 110 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 B3GALNT1O75752 331 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 NTF4P34130 210 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 RPS11P62280 158 aaKnown RBP eCLIP8.62□□□□□ -1.03
SMG6-213ENST00000573166 ZNF816Q0VGE8 651 aaPredicted RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 RAB31Q13636 194 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 EXOSC2Q13868 293 aaKnown RBP8.62□□□□□ -1.03
SMG6-213ENST00000573166 HNF4GQ14541 408 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 ZNF546Q86UE3 836 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 SLC35G3Q8N808 338 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 OR52B4Q8NGK2 314 aa8.62□□□□□ -1.03
SMG6-213ENST00000573166 DPRXA6NFQ7 191 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 DEFA4P12838 97 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 DAOP14920 347 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 DTYMKP23919 212 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 MRPS11P82912 194 aaKnown RBP8.61□□□□□ -1.03
SMG6-213ENST00000573166 OPCMLQ14982 345 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 SP6Q3SY56 376 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 SIGIRRQ6IA17 410 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 C1QL2Q7Z5L3 287 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 WDR31Q8NA23 367 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 SULT4A1Q9BR01 284 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 COMMD5Q9GZQ3 224 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 NCBP2LA6PVI3 153 aaKnown RBP8.61□□□□□ -1.03
SMG6-213ENST00000573166 KRBOX1C9JBD0 128 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 KRASP01116 189 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 OR4E1P0C645 316 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 SORDQ00796 357 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 LYZL4Q96KX0 146 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 PBDC1Q9BVG4 233 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 HIPK2Q9H2X6 1198 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 PPP1R3EQ9H7J1 279 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 CRIM1Q9NZV1 1036 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 C1orf196B1AJZ1 125 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 COX5AP20674 150 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 BTG1P62324 171 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 HLA-DRB3P79483 266 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 MOGAT2Q3SYC2 334 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 ZNRF1Q8ND25 227 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 OR11H7Q8NGC8 314 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 MARS2Q96GW9 593 aaKnown RBP8.61□□□□□ -1.03
SMG6-213ENST00000573166 SMIM3Q9BZL3 60 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 CHODLQ9H9P2 273 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 LPAR3Q9UBY5 353 aa8.61□□□□□ -1.03
SMG6-213ENST00000573166 FCGR3BO75015 233 aa8.6□□□□□ -1.03
SMG6-213ENST00000573166 MUC1P15941 1255 aaPredicted RBP8.6□□□□□ -1.03
SMG6-213ENST00000573166 TMEM128Q5BJH2 165 aa8.6□□□□□ -1.03
SMG6-213ENST00000573166 SHEQ5VZ18 495 aa8.6□□□□□ -1.03
SMG6-213ENST00000573166 UNKLQ9H9P5 680 aaKnown RBP8.6□□□□□ -1.03
SMG6-213ENST00000573166 RASL12Q9NYN1 266 aa8.6□□□□□ -1.03
SMG6-213ENST00000573166 MIOXQ9UGB7 285 aa8.6□□□□□ -1.03
SMG6-213ENST00000573166 ADAM10O14672 748 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms