RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 IGHV1-45A0A0A0MS14 117 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 C11orf94C9JXX5 98 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 C3orf80F5H4A9 247 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 SPINK4O60575 86 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 PAX6P26367 422 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 DPPA3Q6W0C5 159 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 KLHDC1Q8N7A1 406 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 OR2T10Q8NGZ9 312 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 MKRN2OSH3BPM6 223 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 SLC36A1Q7Z2H8 476 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 MOB3BQ86TA1 216 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 MARVELD3Q96A59 401 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 FKBP11Q9NYL4 201 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 TINAGQ9UJW2 476 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 DBX1A6NMT0 343 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 FCN1O00602 326 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 G6PCP35575 357 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 TNFAIP6P98066 277 aaPredicted RBP13.36□□□□□ -0.27
CIITA-204ENST00000570546 IGSF11Q5DX21 431 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 ANGPTL4Q9BY76 406 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 OR6C3Q9NZP0 311 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 ANK1P16157 1881 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 SOX8P57073 446 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 OR4S2Q8NH73 311 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 ZNRF4Q8WWF5 429 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 FBXO17Q96EF6 278 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 OR10C1Q96KK4 312 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 MS4A10Q96PG2 267 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 HSBP1O75506 76 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 C9orf152Q5JTZ5 239 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 LAMTOR1Q6IAA8 161 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 MRGPRGQ86SM5 289 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 KIAA1324LA8MWY0 1029 aaPredicted RBP13.36□□□□□ -0.27
CIITA-204ENST00000570546 TMEM229AB2RXF0 380 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 CLEC3BP05452 202 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 AQP10Q96PS8 301 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 C5orf66Q9H5L9 145 aa13.36□□□□□ -0.27
CIITA-204ENST00000570546 CRYM-AS1A6NIL9 109 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 HES3Q5TGS1 186 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 ACSM6Q6P461 480 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 OR1K1Q8NGR3 316 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 ZNF488Q96MN9 340 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 RNF122Q9H9V4 155 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 MISP3Q96FF7 219 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 EPOPA6NHQ4 379 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 OR10A7Q8NGE5 316 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 TMEM230Q96A57 120 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 NUDT16L1Q9BRJ7 211 aaKnown RBP13.35□□□□□ -0.27
CIITA-204ENST00000570546 C17orf51A8MQB3 221 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 RPL11P62913 178 aaKnown RBP13.35□□□□□ -0.27
CIITA-204ENST00000570546 NDFIP1Q9BT67 221 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 GAL3ST2Q9H3Q3 398 aa13.35□□□□□ -0.27
CIITA-204ENST00000570546 OR5H1A6NKK0 313 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 PATE3B3GLJ2 98 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 AGFG2O95081 481 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 FBP1P09467 338 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 MS4A3Q96HJ5 214 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 SNX22Q96L94 193 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 CCDC88CQ9P219 2028 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 C21orf140B9A014 251 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 SLC23A3Q6PIS1 610 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 BHLHA15Q7RTS1 189 aaPredicted RBP13.34□□□□□ -0.27
CIITA-204ENST00000570546 SLC2A8Q9NY64 477 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 CA11O75493 328 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 CEACAM21Q3KPI0 293 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 GFRALQ6UXV0 394 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 SLC25A45Q8N413 288 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 ZBTB34Q8NCN2 500 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 SLC25A40Q8TBP6 338 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 PACRGQ96M98 296 aaPredicted RBP13.34□□□□□ -0.27
CIITA-204ENST00000570546 IGKV3-11P04433 115 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 SLC25A5P05141 298 aaKnown RBP13.34□□□□□ -0.27
CIITA-204ENST00000570546 SPEM2Q0P670 501 aa13.34□□□□□ -0.27
CIITA-204ENST00000570546 NOL4LQ96MY1 436 aaPredicted RBP13.34□□□□□ -0.27
CIITA-204ENST00000570546 hADV38S2A0JD32 116 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 PRF1P14222 555 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 SNAI3Q3KNW1 292 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 KHDC3LQ587J8 217 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 MDP1Q86V88 176 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 ADTRPQ96IZ2 230 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 TMEM222Q9H0R3 208 aa13.33□□□□□ -0.27
CIITA-204ENST00000570546 TRGV8A0A0C4DH27 118 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 LOC101059948A0A1B0GTJ6 334 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 ZNF98A6NK75 572 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 RECKO95980 971 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 GYPAP02724 150 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 FGF12P61328 243 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 RUNX1Q01196 453 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 OR5I1Q13606 314 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 ETFRF1Q6IPR1 90 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 NR2C2APQ86WQ0 139 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 SMDT1Q9H4I9 107 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 BARX1Q9HBU1 254 aaPredicted RBP13.33□□□□□ -0.28
CIITA-204ENST00000570546 PAGE4O60829 102 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 RPS11P62280 158 aaKnown RBP eCLIP13.33□□□□□ -0.28
CIITA-204ENST00000570546 MRPS11P82912 194 aaKnown RBP13.33□□□□□ -0.28
CIITA-204ENST00000570546 SLC35E3Q7Z769 313 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 PIKFYVEQ9Y2I7 2098 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 TMEM210A6NLX4 147 aa13.33□□□□□ -0.28
CIITA-204ENST00000570546 TMEM14DPA8MWL7 114 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms