RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 B9D2Q9BPU9 175 aa11.78□□□□□ -0.52
CLN3-236ENST00000568558 TRAV39A0A0B4J263 110 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 HSD17B6O14756 317 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 MAGEB3O15480 346 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 MYCNOSP40205 109 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 AQP4P55087 323 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 SLC35B1P78383 322 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 ZNF816Q0VGE8 651 aaPredicted RBP11.77□□□□□ -0.53
CLN3-236ENST00000568558 EBI3Q14213 229 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 RSU1Q15404 277 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 KLHL22Q53GT1 634 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 ASCL4Q6XD76 172 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 SATL1Q86VE3 508 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 STPG2Q8N412 459 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 SETD9Q8NE22 299 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 KLHL30-AS1Q8NEE0 82 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 OR10X1Q8NGY0 326 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 FBLIM1Q8WUP2 373 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 RGP1Q92546 391 aaPredicted RBP11.77□□□□□ -0.53
CLN3-236ENST00000568558 TFAP2CQ92754 450 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 JAM3Q9BX67 310 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 FAM192AQ9GZU8 254 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 ZNF581Q9P0T4 197 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 CLEC2DQ9UHP7 191 aa11.77□□□□□ -0.53
CLN3-236ENST00000568558 IGHV1-3A0A0C4DH29 117 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 A0A1W2PPE3 182 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 HTR3BO95264 441 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 SOX2P48431 317 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 GTF2A1P52655 376 aaPredicted RBP11.76□□□□□ -0.53
CLN3-236ENST00000568558 GBX2P52951 348 aaPredicted RBP11.76□□□□□ -0.53
CLN3-236ENST00000568558 OR2G6Q5TZ20 316 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 XAF1Q6GPH4 301 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 ZNF695Q8IW36 515 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 FOXRED2Q8IWF2 684 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 C8orf59Q8N0T1 100 aaPredicted RBP11.76□□□□□ -0.53
CLN3-236ENST00000568558 SUMF2Q8NBJ7 301 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 DPCDQ9BVM2 203 aaPredicted RBP11.76□□□□□ -0.53
CLN3-236ENST00000568558 TAS2R4Q9NYW5 299 aa11.76□□□□□ -0.53
CLN3-236ENST00000568558 LINC01548A6NM66 108 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 H0YHG0 523 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 GAPDHP04406 335 aaKnown RBP11.75□□□□□ -0.53
CLN3-236ENST00000568558 DCTN2Q13561 401 aaKnown RBP11.75□□□□□ -0.53
CLN3-236ENST00000568558 NHLRC3Q5JS37 347 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 TGIF2LXQ8IUE1 241 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 IZUMO1Q8IYV9 350 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 Q8N6K4 173 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 GGHQ92820 318 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 EAF1Q96JC9 268 aaPredicted RBP11.75□□□□□ -0.53
CLN3-236ENST00000568558 WWC2-AS2Q96NR7 200 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 VCXQ9H320 206 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 IFT22Q9H7X7 185 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 IL36GQ9NZH8 169 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 DIMT1Q9UNQ2 313 aaKnown RBP11.75□□□□□ -0.53
CLN3-236ENST00000568558 ST3GAL6Q9Y274 331 aa11.75□□□□□ -0.53
CLN3-236ENST00000568558 SIRT4Q9Y6E7 314 aaPredicted RBP11.75□□□□□ -0.53
CLN3-236ENST00000568558 IGHV3-72A0A0B4J1Y9 119 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 C15orf65H3BRN8 121 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 AP4M1O00189 453 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 CCRL2O00421 344 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 OR7C1O76099 320 aaPredicted RBP11.74□□□□□ -0.53
CLN3-236ENST00000568558 CDRT1O95170 752 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 LALBAP00709 142 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 CD2P06729 351 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 GZMHP20718 246 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 DCKP27707 260 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 REG1BP48304 166 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 RBM11P57052 281 aaKnown RBP11.74□□□□□ -0.53
CLN3-236ENST00000568558 DOC2BQ14184 412 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 TEX38Q6PEX7 206 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 UNQ9370/PRO34162Q6UXP9 181 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 MOB3BQ86TA1 216 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 LINC00311Q8N616 119 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 OR52M1Q8NGK5 317 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 RAX2Q96IS3 184 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 DUX3Q96PT4 197 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 ABCG5Q9H222 651 aa11.74□□□□□ -0.53
CLN3-236ENST00000568558 LIN7CQ9NUP9 197 aaKnown RBP11.74□□□□□ -0.53
CLN3-236ENST00000568558 TMEM30CPA0ZSE6 113 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 NCBP2LA6PVI3 153 aaKnown RBP11.73□□□□□ -0.53
CLN3-236ENST00000568558 GEMIN2O14893 280 aaKnown RBP11.73□□□□□ -0.53
CLN3-236ENST00000568558 VSIG8P0DPA2 414 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 GPR12P47775 334 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 DGCR2P98153 550 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 ST3GAL4Q11206 333 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 PNLIPRP3Q17RR3 467 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 HUWE1Q7Z6Z7 4374 aaKnown RBP11.73□□□□□ -0.53
CLN3-236ENST00000568558 LINC00596Q86U02 117 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 C8orf31Q8N9H6 132 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 Q8N9W7 124 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 TMEM104Q8NE00 496 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 BPIFB6Q8NFQ5 453 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 OR2T10Q8NGZ9 312 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 OR52N1Q8NH53 320 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 UBALD1Q8TB05 177 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 GPR148Q8TDV2 347 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 ARL11Q969Q4 196 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 TMEM106AQ96A25 262 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 TMEM80Q96HE8 168 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 METTL9Q9H1A3 318 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 GFOD1Q9NXC2 390 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms