RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 E2F6O75461 281 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 GATBO75879 557 aaKnown RBP8.94□□□□□ -0.98
CLK3-222ENST00000568232 RGS11O94810 467 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 C21orf33P30042 268 aaPredicted RBP8.94□□□□□ -0.98
CLK3-222ENST00000568232 MAGEA2P43356 314 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 MTCP1P56278 107 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 EWSR1Q01844 656 aaKnown RBP eCLIP8.94□□□□□ -0.98
CLK3-222ENST00000568232 PDZK1IP1Q13113 114 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 MICAQ29983 383 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 DNAL1Q4LDG9 190 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 YIPF7Q8N8F6 280 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 OR51T1Q8NGJ9 327 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 ASB17Q8WXJ9 295 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 CMTM5Q96DZ9 223 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 RITA1Q96K30 269 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 KRT84Q9NSB2 600 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 SNX5Q9Y5X3 404 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 IGHV7-81A0A0B4J1V7 117 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 A0A1W2PN81 502 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 SHISA3A0PJX4 238 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 CCDC182A6NF36 153 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 GYG2O15488 501 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 RPP14O95059 124 aaKnown RBP8.93□□□□□ -0.98
CLK3-222ENST00000568232 SERPINA3P01011 423 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 PRDX6P30041 224 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 BLVRBP30043 206 aaPredicted RBP8.93□□□□□ -0.98
CLK3-222ENST00000568232 CHRNA7P36544 502 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 CXCR4P61073 352 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 CDK5R1Q15078 307 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 ECSCRQ19T08 205 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 ZNF322Q6U7Q0 402 aaPredicted RBP8.93□□□□□ -0.98
CLK3-222ENST00000568232 IL34Q6ZMJ4 242 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 SLC16A12Q6ZSM3 486 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 TMEM179BQ7Z7N9 219 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 CHST4Q8NCG5 386 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 OR5D18Q8NGL1 313 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 UBALD1Q8TB05 177 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 FLYWCH2Q96CP2 140 aaKnown RBP8.93□□□□□ -0.98
CLK3-222ENST00000568232 NSMCE2Q96MF7 247 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 SPACA5Q96QH8 159 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 MBOAT4Q96T53 435 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 SPAG4Q9NPE6 437 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 NDE1Q9NXR1 346 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 TAGLN3Q9UI15 199 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 MRM2Q9UI43 246 aaKnown RBP8.93□□□□□ -0.98
CLK3-222ENST00000568232 FBXO7Q9Y3I1 522 aa8.93□□□□□ -0.98
CLK3-222ENST00000568232 NUPR2A6NF83 97 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 H0Y980 276 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 ARPC2O15144 300 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 KDM4BO94953 1096 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 T-ENOLP0DO92 83 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 VHLP40337 213 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 MMDQ15546 238 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 CEMP1Q6PRD7 247 aaPredicted RBP8.92□□□□□ -0.98
CLK3-222ENST00000568232 CD300LDQ6UXZ3 194 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 DEFB125Q8N687 156 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 DNAAF1Q8NEP3 725 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 PLPPR1Q8TBJ4 325 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 MS4A10Q96PG2 267 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 FEVQ99581 238 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 WFDC10AQ9H1F0 79 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 MAGEL2Q9UJ55 1249 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 TMEM14AQ9Y6G1 99 aa8.92□□□□□ -0.98
CLK3-222ENST00000568232 FAT2Q9NYQ8 4349 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 IGHV3-43A0A0B4J1X8 118 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 H0YJX3 145 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 SLC31A2O15432 143 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 CNIH1O95406 144 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 IGHV3-43DP0DP04 118 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 NDPQ00604 133 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 RAB40BQ12829 278 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 C19orf54Q5BKX5 351 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 RSBN1Q5VWQ0 802 aaPredicted RBP8.91□□□□□ -0.98
CLK3-222ENST00000568232 TMEM236Q5W0B7 351 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 RDH10Q8IZV5 341 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 OR10G2Q8NGC3 310 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 OR10A7Q8NGE5 316 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 ADAT3Q96EY9 351 aaPredicted RBP8.91□□□□□ -0.98
CLK3-222ENST00000568232 ANKRD60Q9BZ19 345 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 SLC25A19Q9HC21 320 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 SAMHD1Q9Y3Z3 626 aaKnown RBP8.91□□□□□ -0.98
CLK3-222ENST00000568232 A3GALT2U3KPV4 340 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 DNAH2Q9P225 4427 aa8.91□□□□□ -0.98
CLK3-222ENST00000568232 TRAV24A0A0B4J272 114 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 ATP6V1G2O95670 118 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 HLA-DRB1P01911 266 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 HMGN1P05114 100 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 MED14OSP0DP75 135 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 ATF1P18846 271 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 CD81P60033 236 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 CDK5Q00535 292 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 LRRC36Q1X8D7 754 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 PAN3Q58A45 887 aaKnown RBP8.9□□□□□ -0.98
CLK3-222ENST00000568232 LGALS9CQ6DKI2 356 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 LINC00311Q8N616 119 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 RGP1Q92546 391 aaPredicted RBP8.9□□□□□ -0.98
CLK3-222ENST00000568232 SLC7A6OSQ96CW6 309 aaPredicted RBP8.9□□□□□ -0.98
CLK3-222ENST00000568232 RHOVQ96L33 236 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 NR1H4Q96RI1 486 aaPredicted RBP8.9□□□□□ -0.98
CLK3-222ENST00000568232 BARHL1Q9BZE3 327 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms