RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ST8SIA3O43173 380 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 CEBPDP49716 269 aaPredicted RBP17.15■□□□□ 0.34
CLN3-230ENST00000568076 MST1LQ2TV78 715 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 SHEQ5VZ18 495 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 Q6ZR03 302 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 ZNF826PQ6ZT77 177 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 ZNF695Q8IW36 515 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 BPIFCQ8NFQ6 507 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 IL1F10Q8WWZ1 152 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 HES4Q9HCC6 221 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 PLA2G2EQ9NZK7 142 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 IGHV2OR16-5A0A0B4J2B6 119 aa17.14■□□□□ 0.33
CLN3-230ENST00000568076 PGLYRP1O75594 196 aaPredicted RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 GAPDHP04406 335 aaKnown RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 UCP1P25874 307 aa17.14■□□□□ 0.33
CLN3-230ENST00000568076 BHLHA15Q7RTS1 189 aaPredicted RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 RPRMLQ8N4K4 120 aa17.14■□□□□ 0.33
CLN3-230ENST00000568076 LPAR3Q9UBY5 353 aa17.14■□□□□ 0.33
CLN3-230ENST00000568076 ERRFI1Q9UJM3 462 aaPredicted RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 RCL1Q9Y2P8 373 aaKnown RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 POMT1Q9Y6A1 747 aa17.14■□□□□ 0.33
CLN3-230ENST00000568076 INTS1Q8N201 2190 aaKnown RBP17.14■□□□□ 0.33
CLN3-230ENST00000568076 OR5H1A6NKK0 313 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 B8ZZF3 427 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 NPIPB11E5RHQ5 1161 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 SH2D1BO14796 132 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 ACAA1P09110 424 aaPredicted RBP17.13■□□□□ 0.33
CLN3-230ENST00000568076 KITLGP21583 273 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 EIF5AP63241 154 aaKnown RBP17.13■□□□□ 0.33
CLN3-230ENST00000568076 P2RY6Q15077 328 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 ZFP57Q9NU63 452 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 FAM215AQ9Y5M1 114 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 WNT9BO14905 357 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 KLK10O43240 276 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 FABP6P51161 128 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 CMTM1Q8IZ96 169 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 RBMXL3Q8N7X1 1067 aaKnown RBP17.13■□□□□ 0.33
CLN3-230ENST00000568076 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.13■□□□□ 0.33
CLN3-230ENST00000568076 C11orf1Q9H5F2 150 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 WFDC1Q9HC57 220 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 TRAPPC2LQ9UL33 140 aa17.13■□□□□ 0.33
CLN3-230ENST00000568076 RAB19A4D1S5 217 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 ZNF705EA8MWA4 302 aaPredicted RBP17.12■□□□□ 0.33
CLN3-230ENST00000568076 C1QTNF9BB2RNN3 333 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 TIMM8AO60220 97 aaPredicted RBP17.12■□□□□ 0.33
CLN3-230ENST00000568076 GPR137BO60478 399 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 PSPNO60542 156 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 JTBO76095 146 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 HAND1O96004 215 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 P2RY1P47900 373 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 NMSQ5H8A3 153 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 MOB1BQ7L9L4 216 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 PRR18Q8N4B5 295 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 UBALD1Q8TB05 177 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 BCL2L14Q9BZR8 327 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 MSL2Q9HCI7 577 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 MBNL3Q9NUK0 354 aaKnown RBP17.12■□□□□ 0.33
CLN3-230ENST00000568076 LUZP4Q9P127 313 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 OR14J1Q9UGF5 321 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 SLC25A15Q9Y619 301 aa17.12■□□□□ 0.33
CLN3-230ENST00000568076 H0Y980 276 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.11■□□□□ 0.33
CLN3-230ENST00000568076 ADAM20O43506 726 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 IGLV2-14P01704 120 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 TESK1Q15569 626 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 PRAMEF6Q5VXH4 476 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 SMIM8Q96KF7 97 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 CXXC4Q9H2H0 198 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 WIPI2Q9Y4P8 454 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 MGAQ8IWI9 3026 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 SVILO95425 2214 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 GTF3C1Q12789 2109 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.11■□□□□ 0.33
CLN3-230ENST00000568076 FBXO24O75426 580 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 F2RP25116 425 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 EIF2S3P41091 472 aaKnown RBP17.11■□□□□ 0.33
CLN3-230ENST00000568076 GPR157Q5UAW9 335 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 UQCC3Q6UW78 93 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 BEND4Q6ZU67 534 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 UBAC2Q8NBM4 344 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 OR10V1Q8NGI7 309 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 TLNRD1Q9H1K6 362 aa17.11■□□□□ 0.33
CLN3-230ENST00000568076 APOC3P02656 99 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 TUBG1P23258 451 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 SRSF3P84103 164 aaKnown RBP17.1■□□□□ 0.33
CLN3-230ENST00000568076 ZNF718Q3SXZ3 478 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 MBNL2Q5VZF2 373 aaKnown RBP17.1■□□□□ 0.33
CLN3-230ENST00000568076 ZNF474Q6S9Z5 364 aaPredicted RBP17.1■□□□□ 0.33
CLN3-230ENST00000568076 OR5D13Q8NGL4 314 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 PARP12Q9H0J9 701 aaKnown RBP17.1■□□□□ 0.33
CLN3-230ENST00000568076 TUBG2Q9NRH3 451 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 TAAR3PQ9P1P4 343 aa17.1■□□□□ 0.33
CLN3-230ENST00000568076 DUXBA0A1W2PPF3 345 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 CLEC18AA5D8T8 446 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 LPAR6P43657 344 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 SULT1A2P50226 295 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 AKR1C2P52895 323 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 POLR2GP62487 172 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-230ENST00000568076 NHLH2Q02577 135 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 AKR1C1Q04828 323 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms