RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMEM30CPA0ZSE6 113 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 HSD17B6O14756 317 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 WBP4O75554 376 aaKnown RBP13.5□□□□□ -0.25
CLN3-216ENST00000565316 GAPDHP04406 335 aaKnown RBP13.5□□□□□ -0.25
CLN3-216ENST00000565316 HOXD3P31249 432 aaPredicted RBP13.5□□□□□ -0.25
CLN3-216ENST00000565316 MYCNOSP40205 109 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 C18orf65Q6ZTR6 163 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 SLC35E3Q7Z769 313 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 IZUMO1Q8IYV9 350 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 P2RX4Q99571 388 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 MCRIP2Q9BUT9 160 aaKnown RBP13.5□□□□□ -0.25
CLN3-216ENST00000565316 ING4Q9UNL4 249 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 SIRT4Q9Y6E7 314 aaPredicted RBP13.5□□□□□ -0.25
CLN3-216ENST00000565316 CCRL2O00421 344 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 GEMIN2O14893 280 aaKnown RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 OGG1O15527 345 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 OR7C1O76099 320 aaPredicted RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 DCKP27707 260 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 ZNF93P35789 620 aaPredicted RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 ETV1P50549 477 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 SLC35B1P78383 322 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 SMN1Q16637 294 aaKnown RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 DEFB121Q5J5C9 76 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 DDI2Q5TDH0 399 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 C8orf86Q6ZUL3 223 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 TGIF2LXQ8IUE1 241 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 STPG2Q8N412 459 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 ST6GALNAC6Q969X2 333 aa13.49□□□□□ -0.25
CLN3-216ENST00000565316 EAF1Q96JC9 268 aaPredicted RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 PAK1IP1Q9NWT1 392 aaPredicted RBP13.49□□□□□ -0.25
CLN3-216ENST00000565316 LINC01548A6NM66 108 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 ORC5O43913 435 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 ZNF780AO75290 641 aaPredicted RBP13.48□□□□□ -0.25
CLN3-216ENST00000565316 GPX5O75715 221 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 IGFBP3P17936 291 aaPredicted RBP13.48□□□□□ -0.25
CLN3-216ENST00000565316 BDKRB2P30411 391 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 PPP3R1P63098 170 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 MPV17LQ2QL34 196 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 Q3ZCU0 254 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 TMPRSS11AQ6ZMR5 421 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 ZNF497Q6ZNH5 498 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 MOB3BQ86TA1 216 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 FOXRED2Q8IWF2 684 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 DPF1Q92782 380 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 ARL11Q969Q4 196 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 S100A14Q9HCY8 104 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 GFOD1Q9NXC2 390 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 BABAM2Q9NXR7 383 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 LINC00527Q9UJ94 153 aa13.48□□□□□ -0.25
CLN3-216ENST00000565316 TRBV5-5A0A0J9YX44 114 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 H0YHG0 523 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 MT-ND4P03905 459 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 CSTBP04080 98 aaKnown RBP13.47□□□□□ -0.25
CLN3-216ENST00000565316 CD1BP29016 333 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 GPR12P47775 334 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 REG1BP48304 166 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 OR2G6Q5TZ20 316 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 C11orf87Q6NUJ2 197 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 ZNF695Q8IW36 515 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 PQLC1Q8N2U9 271 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 TMEM104Q8NE00 496 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 OR2T10Q8NGZ9 312 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 SMIM19Q96E16 107 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 ABCG5Q9H222 651 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 PLSCR3Q9NRY6 295 aa13.47□□□□□ -0.25
CLN3-216ENST00000565316 LIN7CQ9NUP9 197 aaKnown RBP13.47□□□□□ -0.25
CLN3-216ENST00000565316 IGHV3-72A0A0B4J1Y9 119 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 NUDT19A8MXV4 375 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 AP4M1O00189 453 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 SDCBPO00560 298 aaPredicted RBP13.46□□□□□ -0.25
CLN3-216ENST00000565316 SERPINA2P20848 420 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 FAM53AQ6NSI3 398 aaPredicted RBP13.46□□□□□ -0.25
CLN3-216ENST00000565316 TEX38Q6PEX7 206 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 RNF152Q8N8N0 203 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 Q8N9W7 124 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 KLHL30-AS1Q8NEE0 82 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 CCDC107Q8WV48 283 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 RTN4IP1Q8WWV3 396 aaPredicted RBP13.46□□□□□ -0.25
CLN3-216ENST00000565316 ORAI1Q96D31 301 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 RDH12Q96NR8 316 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 S100A13Q99584 98 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 B9D2Q9BPU9 175 aa13.46□□□□□ -0.25
CLN3-216ENST00000565316 RCC2Q9P258 522 aaKnown RBP13.46□□□□□ -0.25
CLN3-216ENST00000565316 A0A1W2PP11 408 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 NCBP2LA6PVI3 153 aaKnown RBP13.45□□□□□ -0.26
CLN3-216ENST00000565316 LALBAP00709 142 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 GTF2F2P13984 249 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 IL3RAP26951 378 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 ZNF137PP52743 207 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 RPS11P62280 158 aaKnown RBP eCLIP13.45□□□□□ -0.26
CLN3-216ENST00000565316 RIPK1Q13546 671 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 PNLIPRP3Q17RR3 467 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 SLC22A6Q4U2R8 563 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 ATAD3CQ5T2N8 411 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 DMKNQ6E0U4 476 aaPredicted RBP13.45□□□□□ -0.26
CLN3-216ENST00000565316 GAPTQ8N292 157 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 ZNF439Q8NDP4 499 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 UBALD1Q8TB05 177 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 GHSRQ92847 366 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 RAX2Q96IS3 184 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms