RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 BARHL1Q9BZE3 327 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 TMEM133Q9H2Q1 129 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 NCOR1P1Q9H4R4 102 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 TAS2R3Q9NYW6 316 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 CALYQ9NYX4 217 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 GHRLQ9UBU3 117 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 STEAP1Q9UHE8 339 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 GLS2Q9UI32 602 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 AK3Q9UIJ7 227 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 TRGV10A0A0A0MS01 117 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A10PA6NDY2 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A18PA6NE21 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A16PA6NEW6 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A20PA6NIJ5 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A7PA6NKC0 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ZNF729A6NN14 1252 aaPredicted RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 RNF212BA8MTL3 300 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A22PA8MWA6 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A12PA8MX19 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A5PA8MXJ8 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A23PA8MXZ1 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 AIPO00170 330 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 RAB27BO00194 218 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 IL1AP01583 271 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 RBP4P02753 201 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ARG1P05089 322 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 RNASE1P07998 156 aaKnown RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A15PP0C7V4 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A13PP0C7W8 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A14PP0C7W9 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FAM90A24PP0C7X0 464 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 UBBP0CG47 229 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ARSBP15848 533 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 FUT3P21217 361 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 CD34P28906 385 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 RPS19P39019 145 aaKnown RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 VEGFCP49767 419 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ZNF134P52741 427 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 GPR176Q14439 515 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 GNMTQ14749 295 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 PLA1AQ53H76 456 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 NKAPLQ5M9Q1 402 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 NCR3LG1Q68D85 454 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ZNF880Q6PDB4 577 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 OR2W3Q7Z3T1 314 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 TRAPPC6BQ86SZ2 158 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 PPP1R35Q8TAP8 253 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ZNF418Q8TF45 676 aaPredicted RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 SLC25A38Q96DW6 304 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 ARHGAP5-AS1Q96IT6 56 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 S100A13Q99584 98 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 PECRQ9BY49 303 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 PARP12Q9H0J9 701 aaKnown RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 MEGF9Q9H1U4 602 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 LIN7BQ9HAP6 207 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 PLGRKTQ9HBL7 147 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 MBNL3Q9NUK0 354 aaKnown RBP7.44□□□□□ -1.22
VPS35-206ENST00000565228 ETAA1Q9NY74 926 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 IDI2-AS1Q9NZ38 188 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 SSR3Q9UNL2 185 aa7.44□□□□□ -1.22
VPS35-206ENST00000565228 IGKV1D-8A0A087WSZ0 117 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 A0A0A6YYJ9 748 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 IGKV1-6A0A0C4DH72 117 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 TMEM30CPA0ZSE6 113 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 NOTOA8MTQ0 251 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 CLDN34H7C241 214 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 CHST1O43916 411 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 NAPSAO96009 420 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 BLVRBP30043 206 aaPredicted RBP7.43□□□□□ -1.22
VPS35-206ENST00000565228 KCNJ3P48549 501 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 BPIFB3P59826 476 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 KRTAP10-3P60369 221 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 GUCA2AQ02747 115 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 BLMHQ13867 455 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 CTF1Q16619 201 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 HIST2H2BDQ6DRA6 164 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 SFXN4Q6P4A7 337 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 ABHD12Q8N2K0 398 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 TEX29Q8N6K0 151 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 ZNF439Q8NDP4 499 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 BEND2Q8NDZ0 799 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 OR52L2PQ8NGH6 319 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 KCNG3Q8TAE7 436 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 FAM216AQ8WUB2 273 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 CST11Q9H112 138 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 SLITRK2Q9H156 845 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 ZMAT3Q9HA38 289 aaKnown RBP7.43□□□□□ -1.22
VPS35-206ENST00000565228 DAPK2Q9UIK4 370 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 PSG11Q9UQ72 335 aa7.43□□□□□ -1.22
VPS35-206ENST00000565228 TMEM89A2RUT3 159 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 FAM181BA6NEQ2 426 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 MCRIP1C9JLW8 97 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 H3BUX3 64 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 F2RL2O00254 374 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 MFNGO00587 321 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 PDCD5O14737 125 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 AIREO43918 545 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 HBZP02008 142 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 PTHLHP12272 177 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 MYL9P24844 172 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms