RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 P2RY1P47900 373 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 FAM53AQ6NSI3 398 aaPredicted RBP11.54□□□□□ -0.56
CLK3-215ENST00000564353 ZNF100Q8IYN0 542 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 ZDHHC23Q8IYP9 409 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 FAM24BQ8N5W8 94 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 OR2C3Q8N628 320 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 ZNF703Q9H7S9 590 aaPredicted RBP11.54□□□□□ -0.56
CLK3-215ENST00000564353 BOKQ9UMX3 212 aaPredicted RBP11.54□□□□□ -0.56
CLK3-215ENST00000564353 KIAA1549Q9HCM3 1950 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 TTC28Q96AY4 2481 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 A0A0G2JRQ6 117 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 C7orf77A4D0Y5 90 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 UMAD1C9J7I0 102 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 TRAPPC2LH3BP13 241 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 RPL36A-HNRNPH2H7BZ11 118 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 ATP6V0CP27449 155 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 CLDN18P56856 261 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 SPCS3P61009 180 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 ERVS71-1P61550 626 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 TMPRSS7Q7RTY8 843 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 BOD1Q96IK1 185 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 LUZP4Q9P127 313 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 PROB1E7EW31 1015 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 GAPDHP04406 335 aaKnown RBP11.53□□□□□ -0.56
CLK3-215ENST00000564353 KRTAP27-1Q3LI81 207 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 TMEM251Q8N6I4 163 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 CCDC71LQ8N9Z2 235 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 OR4D5Q8NGN0 318 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 REPIN1Q9BWE0 567 aaKnown RBP11.53□□□□□ -0.56
CLK3-215ENST00000564353 TMEM222Q9H0R3 208 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 OR1A1Q9P1Q5 309 aa11.53□□□□□ -0.56
CLK3-215ENST00000564353 TRDCB7Z8K6 153 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 CELA3BP08861 270 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 EIF2S3P41091 472 aaKnown RBP11.52□□□□□ -0.56
CLK3-215ENST00000564353 DYNLT3P51808 116 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 VAMP2P63027 116 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 TMEM267Q0VDI3 215 aaPredicted RBP11.52□□□□□ -0.56
CLK3-215ENST00000564353 RIPPLY2Q5TAB7 128 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 TMEM211Q6ICI0 200 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 ADAM5Q6NVV9 412 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.52□□□□□ -0.56
CLK3-215ENST00000564353 CXorf67Q86X51 503 aaPredicted RBP11.52□□□□□ -0.56
CLK3-215ENST00000564353 SELENOHQ8IZQ5 122 aaKnown RBP11.52□□□□□ -0.56
CLK3-215ENST00000564353 Q9N2K0 584 aa11.52□□□□□ -0.56
CLK3-215ENST00000564353 ZNF727A8MUV8 499 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 SIRPB1O00241 398 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 SLC31A2O15432 143 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 CHST1O43916 411 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 SYNGR4O95473 234 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 CNOT4O95628 575 aaKnown RBP11.52□□□□□ -0.57
CLK3-215ENST00000564353 EIF3IQ13347 325 aaKnown RBP11.52□□□□□ -0.57
CLK3-215ENST00000564353 SUMF2Q8NBJ7 301 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 RNASE11Q8TAA1 199 aaKnown RBP11.52□□□□□ -0.57
CLK3-215ENST00000564353 APH1AQ96BI3 265 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 ERRFI1Q9UJM3 462 aaPredicted RBP11.52□□□□□ -0.57
CLK3-215ENST00000564353 PPP1R3CQ9UQK1 317 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 POMT1Q9Y6A1 747 aa11.52□□□□□ -0.57
CLK3-215ENST00000564353 CD300LBA8K4G0 201 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 DNPH1O43598 174 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 WISP2O76076 250 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 H2AFB1P0C5Y9 115 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 CEBPDP49716 269 aaPredicted RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 PMP22Q01453 160 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 HABP2Q14520 560 aaPredicted RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 DHRS13Q6UX07 377 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 GCNT2Q8N0V5 402 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 HIST1H2AAQ96QV6 131 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 RBM7Q9Y580 266 aaKnown RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 ESPL1Q14674 2120 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 EP300Q09472 2414 aaPredicted RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 LNP1A1A4G5 178 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 NUDT19A8MXV4 375 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 S100A8P05109 93 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 CYC1P08574 325 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 IAPPP10997 89 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 WNT5AP41221 380 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 RPS16P62249 146 aaKnown RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 EIF2S3LQ2VIR3 472 aaKnown RBP11.51□□□□□ -0.57
CLK3-215ENST00000564353 MCEMP1Q8IX19 187 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 MKXQ8IYA7 352 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 OR1K1Q8NGR3 316 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 HIST1H2BAQ96A08 127 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 PRDM14Q9GZV8 571 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 TMED3Q9Y3Q3 217 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 URGCP-MRPS24S4R325 110 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 SVILO95425 2214 aa11.51□□□□□ -0.57
CLK3-215ENST00000564353 PSG2P11465 335 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 TAS2R60P59551 318 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 CEACAM21Q3KPI0 293 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 ALKBH6Q3KRA9 238 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 TMEM252Q8N6L7 170 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 FAM173AQ9BQD7 235 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 GINS3Q9BRX5 216 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 SCRT1Q9BWW7 348 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 SMCO4Q9NRQ5 59 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 TNRC6BQ9UPQ9 1833 aaKnown RBP11.5□□□□□ -0.57
CLK3-215ENST00000564353 MAP1BP46821 2468 aaKnown RBP11.5□□□□□ -0.57
CLK3-215ENST00000564353 MPLP40238 635 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 FGF12P61328 243 aa11.5□□□□□ -0.57
CLK3-215ENST00000564353 ODF3L1Q8IXM7 274 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms