RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 C8orf4Q9NR00 106 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 PSMB11A5LHX3 300 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 EBAG9O00559 213 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 PF4P02776 101 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 GTF2F2P13984 249 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 TMEM11P17152 192 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 MYL12AP19105 171 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 FSTP19883 344 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 GPR176Q14439 515 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 Q499Y3 187 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 C9orf152Q5JTZ5 239 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 ZNF497Q6ZNH5 498 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 CDH26Q8IXH8 852 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 PACRGLQ8N7B6 248 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 OR10X1Q8NGY0 326 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 CHPT1Q8WUD6 406 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 MRPS24Q96EL2 167 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 TMEM80Q96HE8 168 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 PGLYRP3Q96LB9 341 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 S100A13Q99584 98 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 ZNF184Q99676 751 aaPredicted RBP13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 RCC2Q9P258 522 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 CLEC2DQ9UHP7 191 aa13.63□□□□□ -0.23
VPS9D1-203ENST00000563798 TRBV5-7A0A0A0MS05 114 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 TRAV39A0A0B4J263 110 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 HSD17B6O14756 317 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 BAG2O95816 211 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 CLIC3O95833 236 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 IGHG2P01859 326 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 MT-ND4P03905 459 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 GAPDHP04406 335 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 SLC6A1P30531 599 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 GNG10P50151 68 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 ADARB1P78563 741 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 MED21Q13503 144 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 LTC4SQ16873 150 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 IZUMO1Q8IYV9 350 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 GAPTQ8N292 157 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 COMMD1Q8N668 190 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 Q8N6K4 173 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 SETD9Q8NE22 299 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 OR13C5Q8NGS8 318 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 ST6GALNAC6Q969X2 333 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 ORAI1Q96D31 301 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 SPACA1Q9HBV2 294 aa13.62□□□□□ -0.23
VPS9D1-203ENST00000563798 IGHV1-3A0A0C4DH29 117 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 CCRL2O00421 344 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 IGKV1D-33P01593 117 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 IGKV1-33P01594 117 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 CD1AP06126 327 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 SERPINA2P20848 420 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 HES1Q14469 280 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 TMEM30BQ3MIR4 351 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 LYPD6Q86Y78 171 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 LINC00482Q8N8I6 264 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 GGHQ92820 318 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 ARL11Q969Q4 196 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 ZFP57Q9NU63 452 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 CHCHD3Q9NX63 227 aaKnown RBP13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 GFOD1Q9NXC2 390 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 CKLFQ9UBR5 152 aa13.61□□□□□ -0.23
VPS9D1-203ENST00000563798 TRAV8-7A0A075B6U6 113 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 A0A1W2PP11 408 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 A0A1W2PPE3 182 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 MAGEA13PA6NCF6 341 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 ZNF137PP52743 207 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 TAS2R43P59537 309 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 RPL23AP62750 156 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 EGFEM1PQ0D2K5 195 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 SLC22A6Q4U2R8 563 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 ATAD3CQ5T2N8 411 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 ETV3LQ6ZN32 361 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 ZNF329Q86UD4 541 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 TGIF2LXQ8IUE1 241 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 TMEM104Q8NE00 496 aa13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 EAF1Q96JC9 268 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-203ENST00000563798 FAM90A10PA6NDY2 464 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 FAM90A7PA6NKC0 464 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 FAM90A23PA8MXZ1 464 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 SDCBPO00560 298 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 GLAP06280 429 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 CD1BP29016 333 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 THBS3P49746 956 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 ST3GAL4Q11206 333 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 HNF4GQ14541 408 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 STEAP3Q658P3 488 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 SLC35E3Q7Z769 313 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 MRPL41Q8IXM3 137 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 STX19Q8N4C7 294 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 DHRSXQ8N5I4 330 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 ZNF439Q8NDP4 499 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 OR51D1Q8NGF3 324 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 NOL4LQ96MY1 436 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 GPR61Q9BZJ8 451 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 RAB9BQ9NP90 201 aa13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 LIN7CQ9NUP9 197 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 CNOT2Q9NZN8 540 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 MRPS28Q9Y2Q9 187 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-203ENST00000563798 EFCAB10A6NFE3 127 aa13.58□□□□□ -0.24
VPS9D1-203ENST00000563798 SERPINE3A8MV23 424 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms