RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 UBALD1Q8TB05 177 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 SPINT2O43291 252 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 THY1P04216 161 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 RRADP55042 308 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 NNATQ16517 81 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 GNB1LQ9BYB4 327 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 COA3Q9Y2R0 106 aaPredicted RBP5.51□□□□□ -1.53
CLK3-212ENST00000563418 SBF2Q86WG5 1849 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 A0A0A6YYD5 115 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 ZNF324O75467 553 aaPredicted RBP5.51□□□□□ -1.53
CLK3-212ENST00000563418 SLC35B1P78383 322 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 AGERQ15109 404 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 TMEM144Q7Z5S9 345 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 BHLHE23Q8NDY6 225 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 MMABQ96EY8 250 aaPredicted RBP5.51□□□□□ -1.53
CLK3-212ENST00000563418 PLSCR4Q9NRQ2 329 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 LINC01553A4QN01 128 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 H3BP45 60 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 OR14C36Q8NHC7 312 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 APOBEC3DQ96AK3 386 aaPredicted RBP5.51□□□□□ -1.53
CLK3-212ENST00000563418 GRAMD2BQ96HH9 432 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 TMEM222Q9H0R3 208 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 PHIPQ8WWQ0 1821 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 TNFSF11O14788 317 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 CA11O75493 328 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 PSMB5P28074 263 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 C5orf66Q9H5L9 145 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 FAM90A26D6RGX4 464 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 OPRM1P35372 400 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 SP6Q3SY56 376 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 TMEM40Q8WWA1 233 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 RNF181Q9P0P0 153 aa5.51□□□□□ -1.53
CLK3-212ENST00000563418 A0A0G2JK05 382 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 A0A1W2PPE3 182 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CDC42EP2O14613 210 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CHST1O43916 411 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 KLF7O75840 302 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 SERF1AO75920 110 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 MDKP21741 143 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 MST1P26927 711 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 NMUP48645 174 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 FUT6P51993 359 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 RND2P52198 227 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 PRDX4Q13162 271 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 VGLL4Q14135 290 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ACSF3Q4G176 576 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 KCNE4Q8WWG9 221 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 LOXL4Q96JB6 756 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 NDFIP1Q9BT67 221 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SARGQ9BW04 601 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 NXF5Q9H1B4 397 aaKnown RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 KIR2DL5BA0A0G2JN68 375 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 KIR2DL5BA0A0G2JPC4 375 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 H3BNC9 293 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ZNF708P17019 499 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 KIR2DL5AQ8N109 375 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 AGMATQ9BSE5 352 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ZNF665Q9H7R5 613 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SSUH2Q9Y2M2 353 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 GRIFINA4D1Z8 144 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 H3BUT2 72 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TNFP01375 233 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 APOBEC1P41238 236 aaKnown RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 SCGB1D4Q6XE38 83 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SAMD7Q7Z3H4 446 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 MMD2Q8IY49 270 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CMTM8Q8IZV2 173 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SCCPDHQ8NBX0 429 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ALKBH4Q9NXW9 302 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 WDR81Q562E7 1941 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TMED7-TICAM2A0A0A6YYA0 188 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 IL6RP08887 468 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 KIR2DS2P43631 304 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 FOXL1Q12952 345 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TRA2AQ13595 282 aaKnown RBP eCLIP5.5□□□□□ -1.53
CLK3-212ENST00000563418 TEX38Q6PEX7 206 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TRBV5-7A0A0A0MS05 114 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 J3KRW8 73 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 RGRP47804 291 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ICAM4Q14773 271 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 IGFBP7Q16270 282 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 C1orf100Q5SVJ3 147 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 VSTM2AQ8TAG5 236 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 RSPO3Q9BXY4 272 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 CHD3Q12873 2000 aaKnown RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 A0A1W2PPC1 479 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 DHRS3O75911 302 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CXCL1P09341 107 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CAMPP49913 170 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SSPNQ14714 243 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 FIGLAQ6QHK4 219 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 GTSF1LQ9H1H1 148 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 MCTS1Q9ULC4 181 aaKnown RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 TRAV8-7A0A075B6U6 113 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 NKX2-6A6NCS4 301 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 GOSR1O95249 250 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 P01737 135 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TMEM211Q6ICI0 200 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ZNF562Q6V9R5 426 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms