RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZFP57Q9NU63 452 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 ELF5Q9UKW6 265 aaPredicted RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 PCNX3Q9H6A9 2034 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 K7EPK0 472 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 GPR31O00270 319 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 WNT5AP41221 380 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 FGF12P61328 243 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 ATPAF1Q5TC12 328 aaPredicted RBP7.87□□□□□ -1.15
VPS39-205ENST00000562258 Q71RC1 249 aaPredicted RBP7.87□□□□□ -1.15
VPS39-205ENST00000562258 FAM71E2Q8N5Q1 922 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 OR5AP2Q8NGF4 316 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 TREM1Q9NP99 234 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 CBLN4Q9NTU7 201 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 LIN7CQ9NUP9 197 aaKnown RBP7.87□□□□□ -1.15
VPS39-205ENST00000562258 NSG2Q9Y328 171 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 ODAMA1E959 279 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 HPXP02790 462 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 ARG1P05089 322 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 NTF4P34130 210 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 RPP30P78346 268 aaKnown RBP7.87□□□□□ -1.15
VPS39-205ENST00000562258 CD276Q5ZPR3 534 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 NEIL1Q96FI4 390 aaPredicted RBP7.87□□□□□ -1.15
VPS39-205ENST00000562258 PPP1R3EQ9H7J1 279 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 SMLR1H3BR10 107 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 SCTP09683 121 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 LPAR6P43657 344 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 SRPXP78539 464 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 VMA21Q3ZAQ7 101 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 IGSF11Q5DX21 431 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 FAM209AQ5JX71 171 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 AKR1C8PQ5T2L2 129 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 MOB1BQ7L9L4 216 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 OR1L1Q8NH94 360 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 AKR1E2Q96JD6 320 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 SRRQ9GZT4 340 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 MTFP1Q9UDX5 166 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 RPH3ALQ9UNE2 315 aa7.87□□□□□ -1.15
VPS39-205ENST00000562258 A0A1W2PPV4 95 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 RP2O75695 350 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 IGF2-ASQ6U949 168 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 OR13D1Q8NGV5 346 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 ZNF75AQ96N20 296 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 C1QTNF5Q9BXJ0 243 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 TNFSF13O75888 250 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 HBZP02008 142 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 AADACP22760 399 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 KCNJ3P48549 501 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 FAM219AQ8IW50 185 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 WDFY1Q8IWB7 410 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 STOML3Q8TAV4 291 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 OR5P3Q8WZ94 311 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 LPAR5Q9H1C0 372 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 RANGRFQ9HD47 186 aaPredicted RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 PPP1R14DQ9NXH3 145 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 A0A0B4J2A0 478 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 TRDCB7Z8K6 153 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 ISG15P05161 165 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 SELLP14151 372 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 GALP22466 123 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 TUBG1P23258 451 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 SSTR5P35346 364 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 MDH2P40926 338 aaKnown RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 RAB11AP62491 216 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 ERHP84090 104 aaKnown RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 BAXQ07812 192 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 TNXAQ16473 311 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 PNKDQ8N490 385 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 ARRDC1Q8N5I2 433 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 GPX8Q8TED1 209 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 GTF3AQ92664 365 aaKnown RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 ACY3Q96HD9 319 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 SLX1AQ9BQ83 275 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 TUBG2Q9NRH3 451 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 SHPKQ9UHJ6 478 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 LSM2Q9Y333 95 aaKnown RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 NCOA6Q14686 2063 aaPredicted RBP7.86□□□□□ -1.15
VPS39-205ENST00000562258 ZNF292O60281 2723 aa7.86□□□□□ -1.15
VPS39-205ENST00000562258 VPS13AQ96RL7 3174 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ST8SIA3O43173 380 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 SSSCA1O60232 199 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 OR4E1P0C645 316 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 KITLGP21583 273 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 CAMLGP49069 296 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ZNF672Q499Z4 452 aaPredicted RBP7.85□□□□□ -1.15
VPS39-205ENST00000562258 TMEM255AQ5JRV8 349 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ZBTB37Q5TC79 503 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 AQP3Q92482 292 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 LHX4Q969G2 390 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 DUX5Q96PT3 197 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 TMEM246Q9BRR3 403 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 PARP12Q9H0J9 701 aaKnown RBP7.85□□□□□ -1.15
VPS39-205ENST00000562258 MIOXQ9UGB7 285 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 PLXNB3Q9ULL4 1909 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 IGKV3-7A0A075B6H7 116 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 A0A1B0GTI1 187 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 SSX5O60225 188 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 S100A1P23297 94 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 RELL2Q8NC24 303 aaPredicted RBP7.85□□□□□ -1.15
VPS39-205ENST00000562258 RGP1Q92546 391 aaPredicted RBP7.85□□□□□ -1.15
VPS39-205ENST00000562258 NABP1Q96AH0 204 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms