RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 Q6YL49 198 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MOB1BQ7L9L4 216 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 OR52M1Q8NGK5 317 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF596Q8TC21 504 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MRGPRDQ8TDS7 321 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 SSMEM1Q8WWF3 244 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 CREB3L1Q96BA8 519 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 FUNDC2Q9BWH2 189 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MBNL3Q9NUK0 354 aaKnown RBP10.59□□□□□ -0.71
NEDD8-208ENST00000560427 PLEKHJ1Q9NW61 149 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 DAPK2Q9UIK4 370 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 TRAPPC2LQ9UL33 140 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 ETV7Q9Y603 341 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MINOS1-NBL1R4GNA1 71 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 UBE2QL1A1L167 161 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 DNAJC9-AS1A6NH13 148 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 GABARAPO95166 117 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 MELTFP08582 738 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 SSTR5P35346 364 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ALDH3B2P48448 385 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 UBA52P62987 128 aaKnown RBP10.58□□□□□ -0.72
NEDD8-208ENST00000560427 PRB3Q04118 309 aaPredicted RBP10.58□□□□□ -0.72
NEDD8-208ENST00000560427 Q3ZCU0 254 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 BRICD5Q6PL45 260 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 C6orf201Q7Z4U5 140 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ANKRD13BQ86YJ7 626 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ZDHHC22Q8N966 263 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 BEND2Q8NDZ0 799 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 KIRREL1Q96J84 757 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 SULT4A1Q9BR01 284 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 DPAGT1Q9H3H5 408 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 RNF167Q9H6Y7 350 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ESM1Q9NQ30 184 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 IDI2-AS1Q9NZ38 188 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ZNRD1Q9P1U0 126 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 MGAT4AQ9UM21 535 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 CUBNO60494 3623 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 ATRQ13535 2644 aa10.58□□□□□ -0.72
NEDD8-208ENST00000560427 TRBV6-6A0A0A6YYG2 114 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MDFIC2A0A1B0GVS7 189 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 SMIM30A4D0T7 59 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 C15orf65H3BRN8 121 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 SOCS1O15524 211 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 SPINT2O43291 252 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MMP23AO75900 390 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 ARG1P05089 322 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 TFAP2AP05549 437 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 RNASE1P07998 156 aaKnown RBP10.57□□□□□ -0.72
NEDD8-208ENST00000560427 SLC2A2P11168 524 aaPredicted RBP10.57□□□□□ -0.72
NEDD8-208ENST00000560427 OMGP23515 440 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 VEGFCP49767 419 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 RPL15P61313 204 aaKnown RBP10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MXD1Q05195 221 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 Q6ZTK2 550 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 GPR141Q7Z602 305 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 ABHD12Q8N2K0 398 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 OR5R1Q8NH85 324 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 OR9G1Q8NH87 305 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MRPL30Q8TCC3 161 aaKnown RBP10.57□□□□□ -0.72
NEDD8-208ENST00000560427 FAM216AQ8WUB2 273 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 DYRK2Q92630 601 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 RAB3CQ96E17 227 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MALSU1Q96EH3 234 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 FAAP24Q9BTP7 215 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 MEGF9Q9H1U4 602 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 C12orf4Q9NQ89 552 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 KCNIP1Q9NZI2 227 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 ABRACLQ9P1F3 81 aa10.57□□□□□ -0.72
NEDD8-208ENST00000560427 SOX21Q9Y651 276 aaPredicted RBP10.57□□□□□ -0.72
NEDD8-208ENST00000560427 A0A1W2PRD5 423 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 A0A1W2PRF3 423 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 A0A1W2PRM7 423 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 BTBD17A6NE02 478 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 SERPINE3A8MV23 424 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 F2RL2O00254 374 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 HOXA3O43365 443 aaPredicted RBP10.56□□□□□ -0.72
NEDD8-208ENST00000560427 NAPSAO96009 420 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 IGLV1-47P01700 117 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 CLEC2LP0C7M8 214 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 HTR1DP28221 377 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 CEACAM3P40198 252 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 EFNB2P52799 333 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 PRRX1P54821 245 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 DYNC1I2Q13409 638 aaKnown RBP10.56□□□□□ -0.72
NEDD8-208ENST00000560427 SLC9A3R2Q15599 337 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 C8orf31Q8N9H6 132 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 OR4P4Q8NGL7 312 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 OR10R2Q8NGX6 335 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 OR4K15Q8NH41 348 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 CCDC107Q8WV48 283 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 ARL11Q969Q4 196 aa10.56□□□□□ -0.72
NEDD8-208ENST00000560427 KCTD12Q96CX2 325 aaKnown RBP10.56□□□□□ -0.72
NEDD8-208ENST00000560427 AMMECR1Q9Y4X0 333 aaPredicted RBP10.56□□□□□ -0.72
NEDD8-208ENST00000560427 A0A0A6YYH2 397 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 A0A0B4J203 849 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 A6NJ64 397 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 VGLL3A8MV65 326 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 C12orf77C9JDV5 145 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 RAB27BO00194 218 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 MFNGO00587 321 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms