RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RNASE2P10153 161 aaKnown RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 HRES1P13985 223 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 CTLA4P16410 223 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 AKR1C4P17516 323 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ATF1P18846 271 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 CNTFRP26992 372 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 PSMB9P28065 219 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 HLA-DMAP28067 261 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ELK4P28324 431 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 NOS1P29475 1434 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 COILP38432 576 aaPredicted RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 CBX5P45973 191 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 NUDT2P50583 147 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 C1QTNF8P60827 252 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 TPM4P67936 248 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 FAM3AP98173 230 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 EIF4G1Q04637 1599 aaKnown RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 BAMBIQ13145 260 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 CACNA1SQ13698 1873 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 COTL1Q14019 142 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 CASP8Q14790 479 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 PDGFRLQ15198 375 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 PTPRKQ15262 1439 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 MESTQ5EB52 335 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 CENPWQ5EE01 88 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 SPATA31B1PQ5VZV4 182 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 EBLN2Q6P2I7 272 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 SPNS3Q6ZMD2 512 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 DOLPP1Q86YN1 238 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 C2orf73Q8N5S3 287 aaPredicted RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 LINC00304Q8N9R0 145 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ACBD4Q8NC06 268 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ZNF680Q8NEM1 530 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR11G2Q8NGC1 345 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR5D18Q8NGL1 313 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR5L1Q8NGL2 311 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR4P4Q8NGL7 312 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR9I1Q8NGQ6 314 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR5AK3PQ8NH89 298 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 KCTD4Q8WVF5 259 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 UBE2WQ96B02 151 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR2V2Q96R30 315 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 B9D2Q9BPU9 175 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 RTBDNQ9BSG5 229 aaPredicted RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 TSGA10Q9BZW7 698 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 TNKS1BP1Q9C0C2 1729 aaKnown RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 CHST5Q9GZS9 411 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR2D2Q9H210 308 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 KCNIP2Q9NS61 270 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ATP6V1DQ9Y5K8 247 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 DSCAML1Q8TD84 2053 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 DNMT1P26358 1616 aaKnown RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 USP42Q9H9J4 1324 aaKnown RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 ATG2BQ96BY7 2078 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 IGKV1D-17A0A075B6S4 117 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 IGKV1D-37A0A075B6S9 117 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 TINCRA0A1B0GVN0 87 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 GMNCA6NCL1 334 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 OR6C70A6NIJ9 312 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 METTL15A6NJ78 407 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ARGFXA6NJG6 315 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 GOLGA8KD6RF30 607 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 F5H5K5 113 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 F5H5T6 163 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 GOLGA8MH3BSY2 632 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ITGB1BP1O14713 200 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 LECT2O14960 151 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 AZIN1O14977 448 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 SYNGR1O43759 233 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 POP7O75817 140 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 IGKV1-17P01599 117 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 IGLV3-19P01714 112 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 PTHLHP12272 177 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ZNF708P17019 499 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 COL8A2P25067 703 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 GABRA3P34903 492 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 RCVRNP35243 200 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 HSPA13P48723 471 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 CDC34P49427 236 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 RPL14P50914 215 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 EMP2P54851 167 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 FOXA1P55317 472 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 MAP3K7CLP57077 242 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 KRTAP10-10P60014 251 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 SMAGPQ0VAQ4 97 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 SKP2Q13309 424 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 C1DQ13901 141 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 IGFBP7Q16270 282 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 BCL2A1Q16548 175 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 TBC1D28Q2M2D7 210 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 HLA-DRB5Q30154 266 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 LGALSLQ3ZCW2 172 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 DNAL1Q4LDG9 190 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 TRMT12Q53H54 448 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 HENMT1Q5T8I9 393 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 FAM45BPQ6NSW5 357 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 TTC33Q6PID6 262 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 DRAM2Q6UX65 266 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 VN1R4Q7Z5H5 301 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 NT5DC3Q86UY8 548 aa0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms