RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 UNQ6190/PRO20217Q6UXQ8 127 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 TPGS1Q6ZTW0 290 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 BZW1Q7L1Q6 419 aaKnown RBP0.12□□□□□ -2.39
VPS13C-205ENST00000558088 GPATCH11Q8N954 259 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 DRAXINQ8NBI3 349 aaPredicted RBP0.12□□□□□ -2.39
VPS13C-205ENST00000558088 OR11H1Q8NG94 326 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 SPACA4Q8TDM5 124 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 ALX4Q9H161 411 aaPredicted RBP0.12□□□□□ -2.39
VPS13C-205ENST00000558088 FBXL15Q9H469 300 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 CST9LQ9H4G1 147 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 SMDT1Q9H4I9 107 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 CRLF2Q9HC73 371 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 LZTFL1Q9NQ48 299 aa0.12□□□□□ -2.39
VPS13C-205ENST00000558088 INSRP06213 1382 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TMSB15BA0A087X1C1 80 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 LOC100653049A0A140TA62 436 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 C2orf74A8MZ97 194 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 B4DEV8 164 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 H3BPC8 53 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 GOLGA8TH3BQL2 631 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ZNF701M0R085 212 aaPredicted RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 WRBO00258 174 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 GNRH2O43555 120 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ZNF737O75373 536 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TRAPPC6AO75865 159 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 KRT34O76011 436 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 PSMA1P25786 263 aaKnown RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 RPS5P46782 204 aaKnown RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 HSPA13P48723 471 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TAS2R60P59551 318 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 LCN2P80188 198 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ZNF90Q03938 601 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ATP6V1FQ16864 119 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 RASL11AQ6T310 242 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 RPS19BP1Q86WX3 136 aaKnown RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ASCC1Q8N9N2 400 aaKnown RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 CD200R1Q8TD46 325 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TFGQ92734 400 aaPredicted RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 GTF2H4Q92759 462 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 CERS2Q96G23 380 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 NAP1L5Q96NT1 182 aaPredicted RBP0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TM6SF2Q9BZW4 377 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 IL22Q9GZX6 179 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 EXTL2Q9UBQ6 330 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 ALG5Q9Y673 324 aa0.11□□□□□ -2.39
VPS13C-205ENST00000558088 TMEM131Q92545 1883 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 IGKV1D-42A0A075B6H8 117 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 IGKV1-12A0A0C4DH73 117 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 A0A1W2PRF3 423 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 A0A1W2PRM7 423 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 CTAGE15A4D2H0 777 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 PGPA6NDG6 321 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 SUPT3HB4E1H0 165 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 E7EWF7 191 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 UBFD1O14562 309 aaKnown RBP0.1□□□□□ -2.39
VPS13C-205ENST00000558088 PRMT5O14744 637 aaPredicted RBP0.1□□□□□ -2.39
VPS13C-205ENST00000558088 CA2P00918 260 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 IGKV1D-12P01611 117 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 OR8G3PP0DMU2 310 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 GTF2H1P32780 548 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 ARR3P36575 388 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 P2RY2P41231 377 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 SLC35A2P78381 396 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 GLO1Q04760 184 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 STX4Q12846 297 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 FP248Q71RG6 208 aaPredicted RBP0.1□□□□□ -2.39
VPS13C-205ENST00000558088 OR2W3Q7Z3T1 314 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 KRTAP19-3Q7Z4W3 81 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 SLC35E3Q7Z769 313 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 CTAGE6Q86UF2 777 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 OR5J2Q8NH18 312 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 CYGBQ8WWM9 190 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 NELFBQ8WX92 580 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 FAM131CQ96AQ9 280 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 VAT1Q99536 393 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 CDCA4Q9BXL8 241 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 MRPS30Q9NP92 439 aaKnown RBP0.1□□□□□ -2.39
VPS13C-205ENST00000558088 DIABLOQ9NR28 239 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 NMRK1Q9NWW6 199 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 PRO2289Q9P1D8 64 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 RRP15Q9Y3B9 282 aaKnown RBP0.1□□□□□ -2.39
VPS13C-205ENST00000558088 AK9Q5TCS8 1911 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 PTPRJQ12913 1337 aa0.1□□□□□ -2.39
VPS13C-205ENST00000558088 IGHV3OR15-7A0A075B7D8 119 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 IGHV2-26A0A0B4J1V2 119 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 MDFIC2A0A1B0GVS7 189 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 TVP23AA6NH52 213 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 NCF1BA6NI72 391 aaPredicted RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF705FA8MVS1 300 aaPredicted RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 NCF1CA8MVU1 366 aaPredicted RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 TCF21O43680 179 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 PGLYRP1O75594 196 aaPredicted RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 ESDP10768 282 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 SLC2A1P11166 492 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 SPNP16150 400 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 GPX2P18283 190 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 CPN2P22792 545 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 AKR1C3P42330 323 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 SULT1A2P50226 295 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 MP68P56378 58 aa0.09□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms