RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 P4HTMQ9NXG6 502 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ATP23Q9Y6H3 246 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 TRBV6-6A0A0A6YYG2 114 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CYB5BO43169 146 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CYB5R3P00387 301 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CD200P41217 278 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 PMS2P11Q13670 270 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 GUSBP11Q6P575 273 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 COLCA1Q6ZS62 124 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 HIST3H2BBQ8N257 126 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 RCC1LQ96I51 464 aaKnown RBP13.98□□□□□ -0.17
SHMT2-232ENST00000557487 FAM210BQ96KR6 192 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 PLK3Q9H4B4 646 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ARID1AO14497 2285 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 TMEM50AO95807 157 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 IFNA10P01566 189 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 COX6A1P12074 109 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 CEBPGP53567 150 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 MLF1P58340 268 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 B3GALT5-AS1P59052 145 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 ASCL5Q7RTU5 278 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 CALHM1Q8IU99 346 aa13.97□□□□□ -0.17
SHMT2-232ENST00000557487 JSRP1Q96MG2 331 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-232ENST00000557487 PARD6GQ9BYG4 376 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-232ENST00000557487 TRBV24-1A0A075B6N3 115 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 TGIF2-C20orf24A0A0A6YYL0 155 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 NDUFS6O75380 124 aaKnown RBP13.96□□□□□ -0.17
SHMT2-232ENST00000557487 OPN1MWP04001 364 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 KLK3P07288 261 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-232ENST00000557487 OPN1MW2P0DN77 364 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 OPN1MW3P0DN78 364 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 BCL2P10415 239 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 EPHA1P21709 976 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 EPHA8P29322 1005 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-232ENST00000557487 PAX9P55771 341 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 CEACAM16Q2WEN9 425 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 RPS19BP1Q86WX3 136 aaKnown RBP13.96□□□□□ -0.17
SHMT2-232ENST00000557487 MKXQ8IYA7 352 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 TMEM217Q8N7C4 229 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF383Q8NA42 475 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 SCGB1C1Q8TD33 95 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 GPR35Q9HC97 309 aa13.96□□□□□ -0.17
SHMT2-232ENST00000557487 OR5H1A6NKK0 313 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 PGLYRP1O75594 196 aaPredicted RBP13.96□□□□□ -0.18
SHMT2-232ENST00000557487 CNOT4O95628 575 aaKnown RBP13.96□□□□□ -0.18
SHMT2-232ENST00000557487 IFNA1P01562 189 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 MMP7P09237 267 aaPredicted RBP13.96□□□□□ -0.18
SHMT2-232ENST00000557487 EDN3P14138 238 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 F2RP25116 425 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 SSTP61278 116 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 SERF2P84101 59 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 ZNF154Q13106 437 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 PMS2CLQ68D20 193 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 SLC25A24Q6NUK1 477 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 ZNF343Q6P1L6 599 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 OR10D4PQ8NGN7 298 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 NAT6Q93015 286 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 LSM10Q969L4 123 aaKnown RBP13.96□□□□□ -0.18
SHMT2-232ENST00000557487 CALHM2Q9HA72 323 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 TAAR3PQ9P1P4 343 aa13.96□□□□□ -0.18
SHMT2-232ENST00000557487 KIAA1549Q9HCM3 1950 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 CEP192Q8TEP8 1941 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 TRBV23-1A0A0A0MS06 115 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 C9J4A7 227 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 SCTP09683 121 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 RUNX1Q01196 453 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 FAM90A2PQ658T7 463 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 NAXEQ8NCW5 288 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 TMEM45BQ96B21 275 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 PINX1Q96BK5 328 aaKnown RBP13.95□□□□□ -0.18
SHMT2-232ENST00000557487 ALKBH3Q96Q83 286 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-232ENST00000557487 CCL28Q9NRJ3 127 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 MRPS18CQ9Y3D5 142 aaKnown RBP13.95□□□□□ -0.18
SHMT2-232ENST00000557487 RFNGQ9Y644 331 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 HS3ST3B1Q9Y662 390 aa13.95□□□□□ -0.18
SHMT2-232ENST00000557487 IGKV1D-13A0A0B4J2D9 117 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 LY6G6EA0A0G2JKS1 128 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 GFRA3O60609 400 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 TRGC2P03986 189 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 IGKV1-13P0DP09 117 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 BCL3P20749 454 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 HAAOP46952 286 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 HERPUD1Q15011 391 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 PDCD1Q15116 288 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 OR2T2Q6IF00 324 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 SPNS3Q6ZMD2 512 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 GGNQ86UU5 652 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 THNSL2Q86YJ6 484 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 REPIN1Q9BWE0 567 aaKnown RBP13.94□□□□□ -0.18
SHMT2-232ENST00000557487 GNG13Q9P2W3 67 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 URGCP-MRPS24S4R325 110 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 U3KQA8 63 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 SERPINE2P07093 398 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 UMODP07911 640 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 CELA2AP08217 269 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 COX5BP10606 129 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 PKIAP61925 76 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 RPS18P62269 152 aaKnown RBP13.94□□□□□ -0.18
SHMT2-232ENST00000557487 RAB11AP62491 216 aa13.94□□□□□ -0.18
SHMT2-232ENST00000557487 CEACAM21Q3KPI0 293 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms