RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 GPR148Q8TDV2 347 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ISOC2Q96AB3 205 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 DDIT4LQ96D03 193 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 WDR89Q96FK6 387 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CLCC1Q96S66 551 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 KCNK15Q9H427 330 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 RNF122Q9H9V4 155 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ZNF586Q9NXT0 402 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ALKBH4Q9NXW9 302 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR6C3Q9NZP0 311 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 C19orf25Q9UFG5 118 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 FOXJ3Q9UPW0 622 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 B3GALT5Q9Y2C3 310 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 KNTC1P50748 2209 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 A0A1W2PNR3 127 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ZNF785A8K8V0 405 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 B5MCH6 92 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 RNASEK-C17orf49H0YIS7 233 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 TRAF3IP2O43734 574 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CER1O95813 267 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ABOP16442 354 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 EDN2P20800 178 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 DAP3P51398 398 aaKnown RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 EIF2B1Q14232 305 aaKnown RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 LPAL2Q16609 132 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR4A47Q6IF82 309 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 TMPRSS12Q86WS5 348 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 PNLDC1Q8NA58 520 aaKnown RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR4D5Q8NGN0 318 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 SYNPRQ8TBG9 265 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 DCUN1D4Q92564 292 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ARL11Q969Q4 196 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 RAX2Q96IS3 184 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 PBDC1Q9BVG4 233 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 SH2D2AQ9NP31 389 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 KLK11Q9UBX7 282 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 FBXL17Q9UF56 701 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 MED13Q9UHV7 2174 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 TRAV30A0A087WSZ9 112 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 C7orf66A4D0T2 115 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 RBFOX2O43251 390 aaKnown RBP eCLIP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 PGA4P0DJD7 388 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 PGA3P0DJD8 388 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CCL3P10147 92 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CD37P11049 281 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 IGFBP3P17936 291 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CDK2P24941 298 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 MMP16P51512 607 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 EFNB2P52799 333 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 AIMP2Q13155 320 aaKnown RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 MFAP5Q13361 173 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 BCL2L15Q5TBC7 163 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ASCL5Q7RTU5 278 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 LYPD6Q86Y78 171 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 MRPL41Q8IXM3 137 aaKnown RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 TOMM5Q8N4H5 51 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 RELL2Q8NC24 303 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR11G2Q8NGC1 345 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR9G4Q8NGQ1 327 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR52I2Q8NH67 350 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 OR4A16Q8NH70 328 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 WNT2BQ93097 391 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 NEIL1Q96FI4 390 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CIB3Q96Q77 187 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 DEFB126Q9BYW3 111 aa4.42□□□□□ -1.7
TMEM260-210ENST00000556422 ZNF107Q9UII5 783 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-210ENST00000556422 CACNA1HO95180 2353 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 LMX1BO60663 402 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 HAND1O96004 215 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 ACP1P24666 158 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 GDF1P27539 372 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 RPS27AP62979 156 aaKnown RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 JOSD1Q15040 202 aaPredicted RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 ASCL4Q6XD76 172 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 LGI3Q8N145 548 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 OR2Y1Q8NGV0 311 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 OR2AE1Q8NHA4 323 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 SSBP4Q9BWG4 385 aaPredicted RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 EMC9Q9Y3B6 208 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 LOC105371242A0A075B767 164 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 GABARAPH6UMI1 98 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 DVL1O14640 695 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 ZNF207O43670 478 aaKnown RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 TIMM8AO60220 97 aaPredicted RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 CSN2P05814 226 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 UCP3P55916 312 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 UBE2MP61081 183 aaKnown RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 BTG1P62324 171 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 H3F3AP84243 136 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 HIST3H3Q16695 136 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 CT83Q5H943 113 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 FAM78BQ5VT40 261 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 TMEM225Q6GV28 225 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 OR2T2Q6IF00 324 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 KCTD18Q6PI47 426 aaPredicted RBP4.41□□□□□ -1.7
TMEM260-210ENST00000556422 GSG1LQ6UXU4 331 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 CD163Q86VB7 1156 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 LRP11Q86VZ4 500 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 FAM24BQ8N5W8 94 aa4.41□□□□□ -1.7
TMEM260-210ENST00000556422 OR11H4Q8NGC9 324 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms