RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 STRAPQ9Y3F4 350 aaKnown RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 PTPRSQ13332 1948 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.82□□□□□ -0.36
CUX1-215ENST00000556210 MPPED1O15442 326 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 HKR1P10072 659 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 ECI1P42126 302 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 NSUN5P2Q63ZY6 315 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 ZNF826PQ6ZT77 177 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 NUFIP2Q7Z417 695 aaKnown RBP12.82□□□□□ -0.36
CUX1-215ENST00000556210 BTNL3Q6UXE8 466 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 TMEM178AQ8NBL3 297 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 NECAP1Q8NC96 275 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 DMBX1Q8NFW5 382 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 Q96M66 194 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 SF3B5Q9BWJ5 86 aaKnown RBP12.82□□□□□ -0.36
CUX1-215ENST00000556210 RFNGQ9Y644 331 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 POMT1Q9Y6A1 747 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 CEACAM6P40199 344 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 LIAT1Q6ZQX7 453 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 CLDN23Q96B33 292 aa12.82□□□□□ -0.36
CUX1-215ENST00000556210 NKX2-8O15522 239 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 GNG3P63215 75 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 HABP2Q14520 560 aaPredicted RBP12.81□□□□□ -0.36
CUX1-215ENST00000556210 MARS2Q96GW9 593 aaKnown RBP12.81□□□□□ -0.36
CUX1-215ENST00000556210 CACNG5Q9UF02 275 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 WASF3Q9UPY6 502 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 PLCE1Q9P212 2302 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 LDLRAD4O15165 306 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 GPR137BO60478 399 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 ZNF17P17021 662 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 HLA-GP17693 338 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 RBM11P57052 281 aaKnown RBP12.81□□□□□ -0.36
CUX1-215ENST00000556210 C21orf62-AS1Q17RA5 79 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 SSX3Q99909 188 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 PRO1933Q9H354 126 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 F8VVB4 439 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 F8VWA3 439 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 TFF1P04155 84 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 ZNF708P17019 499 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 ARR3P36575 388 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 COMMD1Q8N668 190 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 LINC00469Q8N7U9 141 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 FADS6Q8N9I5 356 aa12.81□□□□□ -0.36
CUX1-215ENST00000556210 HGFACQ04756 655 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 MDP1Q86V88 176 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 MRGPRFQ96AM1 343 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 OR51M1Q9H341 326 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 TMEM9BQ9NQ34 198 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 ZNF727A8MUV8 499 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 ERVS71-1P61550 626 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 MRGPRDQ8TDS7 321 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 RTL8AQ9BWD3 113 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 IGKV1-12A0A0C4DH73 117 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 IGKV1D-12P01611 117 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 BAXQ07812 192 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 CST9LP1Q5W188 147 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 ZNF610Q8N9Z0 462 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 TP53RKQ96S44 253 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 CYTL1Q9NRR1 136 aa12.8□□□□□ -0.36
CUX1-215ENST00000556210 IGKV1-27A0A075B6S5 117 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 OR3A1P47881 315 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 DYNLT3P51808 116 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 SUPT4H1P63272 117 aaKnown RBP12.79□□□□□ -0.36
CUX1-215ENST00000556210 UBAC2Q8NBM4 344 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 BSCL2Q96G97 398 aaPredicted RBP12.79□□□□□ -0.36
CUX1-215ENST00000556210 PLEKHF2Q9H8W4 249 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 PNRC2Q9NPJ4 139 aaKnown RBP12.79□□□□□ -0.36
CUX1-215ENST00000556210 LOC390937A0A1W2PQ73 354 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 COLCA2A8K830 154 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 RHBDL1O75783 438 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 IFNA10P01566 189 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 FABP4P15090 132 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 NTF4P34130 210 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 POC1AQ8NBT0 407 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 OR5B12Q96R08 314 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 SLC39A9Q9NUM3 307 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 LIPGQ9Y5X9 500 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 LINC01387J3KSC0 135 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 SRSF10O75494 262 aaKnown RBP12.79□□□□□ -0.36
CUX1-215ENST00000556210 TLE4Q04727 773 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 Q0VFX4 171 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 ZNF429Q86V71 674 aa12.79□□□□□ -0.36
CUX1-215ENST00000556210 RPUSD4Q96CM3 377 aaKnown RBP12.79□□□□□ -0.36
CUX1-215ENST00000556210 NPIPB13A6NJU9 1138 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 NPIPB4C9JG80 1138 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SSX2Q16385 188 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 DNM1P46Q6ZS02 220 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SMIM8Q96KF7 97 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 OSGIN2Q9Y236 505 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 WSB1Q9Y6I7 421 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SYNGR3O43761 229 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 PSG2P11465 335 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SELENOVP59797 346 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 PSENENQ9NZ42 101 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 CEP295Q9C0D2 2601 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 PHOX2AO14813 284 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 ADIRFQ15847 76 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 ZNF383Q8NA42 475 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 OPA3Q9H6K4 179 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SPG11Q96JI7 2443 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms