RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	RAB2A	P61019	212 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	HIKESHI	Q53FT3	197 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	SOHLH1	Q5JUK2	328 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	DCAF10	Q5QP82	559 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	SP5	Q6BEB4	398 aa	Predicted RBP	11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	SPSB3	Q6PJ21	355 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	ODF3L1	Q8IXM7	274 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	TMEM105	Q8N8V8	129 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	CD300LF	Q8TDQ1	290 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	IP6K3	Q96PC2	410 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	HES7	Q9BYE0	225 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	MAGT1	Q9H0U3	335 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	RNF115	Q9Y4L5	304 aa		11.51	□□□□□ -0.57
SHMT2-222	ENST00000555774	HSPB6	O14558	160 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	ITGA3	P26006	1051 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	SULT1A1	P50225	295 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	RPL23A	P62750	156 aa	Known RBP	11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	STX12	Q86Y82	276 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	OR1K1	Q8NGR3	316 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	RBMXL1	Q96E39	390 aa	Known RBP	11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	RAB40C	Q96S21	281 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	OR51I2	Q9H344	312 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	DLL3	Q9NYJ7	618 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	FOXJ2	Q9P0K8	574 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	TAAR3P	Q9P1P4	343 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	RTTN	Q86VV8	2226 aa		11.5	□□□□□ -0.57
SHMT2-222	ENST00000555774	C5orf52	A6NGY3	159 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	CHST1	O43916	411 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	TMEM50A	O95807	157 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	S100A8	P05109	93 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	HOXB1	P14653	301 aa	Predicted RBP	11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	RAB5A	P20339	215 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	OMG	P23515	440 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	WNT5A	P41221	380 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	AKR1C3	P42330	323 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	TLE4	Q04727	773 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	CLN3	Q13286	438 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	AKR1C8P	Q5T2L2	129 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	NUFIP2	Q7Z417	695 aa	Known RBP	11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774		Q8IYB0	196 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	ZFP62	Q8NB50	900 aa	Predicted RBP	11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	LSM10	Q969L4	123 aa	Known RBP	11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	SMOC1	Q9H4F8	434 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	GP6	Q9HCN6	339 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	UBE2C	O00762	179 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	S100A6	P06703	90 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	SERPINE2	P07093	398 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	PAX9	P55771	341 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	TAS2R30	P59541	319 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	C5orf24	Q7Z6I8	188 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774	OR10V1	Q8NGI7	309 aa		11.49	□□□□□ -0.57
SHMT2-222	ENST00000555774		A0A1W2PPH5	198 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	PCP4L1	A6NKN8	68 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	KLRC4-KLRK1	H3BQV0	150 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	HSPB1	P04792	205 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	SP1	P08047	785 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	OR13C7	P0DN81	318 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	MPL	P40238	635 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	ZNF506	Q5JVG8	444 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	C20orf204	Q6ZNR8	217 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	BCL2L2	Q92843	193 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	GPR146	Q96CH1	333 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	RTL8A	Q9BWD3	113 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	SPEG	Q15772	3267 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774		A6NLC8	198 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	HS3ST1	O14792	307 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	GPR37	O15354	613 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	TXNL1	O43396	289 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	CST7	O76096	145 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	CD200	P41217	278 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	MEOX1	P50221	254 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	SNRPE	P62304	92 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	KRBOX4	Q5JUW0	171 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774		Q6P435	159 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	RDH5	Q92781	318 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	PLA2G3	Q9NZ20	509 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	WSB1	Q9Y6I7	421 aa		11.48	□□□□□ -0.57
SHMT2-222	ENST00000555774	TRAV1-1	A0A0B4J248	108 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	TNFSF12	O43508	249 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	CNOT4	O95628	575 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	IFNA5	P01569	189 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	SRP19	P09132	144 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	SMIM6	P0DI80	62 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	ZNF154	Q13106	437 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	FBXW9	Q5XUX1	488 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	LINC00696	Q6ZRV3	163 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	C1QL4	Q86Z23	238 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	MDS2	Q8NDY4	140 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	ZNF488	Q96MN9	340 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	RARRES2	Q99969	163 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	TCEAL7	Q9BRU2	100 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	C20orf24	Q9BUV8	137 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	METTL1	Q9UBP6	276 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	ERRFI1	Q9UJM3	462 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	POLDIP2	Q9Y2S7	368 aa		11.47	□□□□□ -0.57
SHMT2-222	ENST00000555774	SHANK1	Q9Y566	2161 aa		11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms