RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 DDX18Q9NVP1 670 aaKnown RBP0.45□□□□□ -2.34
SRP54-207ENST00000555535 TAS2R13Q9NYV9 303 aa0.45□□□□□ -2.34
SRP54-207ENST00000555535 RPUSD1Q9UJJ7 312 aaKnown RBP0.45□□□□□ -2.34
SRP54-207ENST00000555535 WASHC3Q9Y3C0 194 aa0.45□□□□□ -2.34
SRP54-207ENST00000555535 LINC00588Q9Y4M8 146 aa0.45□□□□□ -2.34
SRP54-207ENST00000555535 CPAMD8Q8IZJ3 1885 aa0.45□□□□□ -2.34
SRP54-207ENST00000555535 BAZ2BQ9UIF8 2168 aaKnown RBP0.45□□□□□ -2.34
SRP54-207ENST00000555535 SLIT2O94813 1529 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 IGHV2-26A0A0B4J1V2 119 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 IGKV1D-43A0A0B4J1Z2 117 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 IGKV1-12A0A0C4DH73 117 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 A0A1B0GXF2 115 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 A0A1W2PPV4 95 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 LY6LH3BQJ8 138 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 J3QQQ9 107 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 RFXANKO14593 260 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 GMDSO60547 372 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 S1PR2O95136 353 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CA2P00918 260 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 IGKV1D-12P01611 117 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 GPX1P07203 203 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 TPM2P07951 284 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CECR9P0C854 216 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 LYNX1P0DP58 116 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 SRMP19623 302 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CPN2P22792 545 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 PYCR1P32322 319 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 SPAM1P38567 509 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 GABRA4P48169 554 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 HSPA13P48723 471 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CDK9P50750 372 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 UBE2KP61086 200 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 RPL26P61254 145 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 HBG1P69891 147 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 HBG2P69892 147 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 PRDX1Q06830 199 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 SS18Q15532 418 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 ZCWPW2Q504Y3 356 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CLEC12AQ5QGZ9 265 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 ASCL4Q6XD76 172 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CLEC20AQ6ZU45 233 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 SSX7Q7RTT5 188 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 RBM45Q8IUH3 476 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 ZFAND2AQ8N6M9 145 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 ZNF321PQ8N8H1 164 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 OR51Q1Q8NH59 317 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 SUN5Q8TC36 379 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 DOK4Q8TEW6 326 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 FGF13Q92913 245 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 ZMYND19Q96E35 227 aaPredicted RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 PGLYRP3Q96LB9 341 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 CIB1Q99828 191 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 TSGA10Q9BZW7 698 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 ALX4Q9H161 411 aaPredicted RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 VCX3AQ9NNX9 186 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 IFT46Q9NQC8 304 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 RABL2AQ9UBK7 228 aaPredicted RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 RPL26L1Q9UNX3 145 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 TBL2Q9Y4P3 447 aaKnown RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 USH1CQ9Y6N9 552 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 MED12LQ86YW9 2145 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 POLR3AO14802 1390 aaPredicted RBP0.44□□□□□ -2.34
SRP54-207ENST00000555535 RTTNQ86VV8 2226 aa0.44□□□□□ -2.34
SRP54-207ENST00000555535 USP42Q9H9J4 1324 aaKnown RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 AQRO60306 1485 aaKnown RBP eCLIP0.43□□□□□ -2.347e-11■■■■□ 23.2
SRP54-207ENST00000555535 DENND4BO75064 1496 aaPredicted RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 FBN2P35556 2912 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 B4DEV8 164 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 I3L4J1 428 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 PRMT5O14744 637 aaPredicted RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 HMMRO75330 724 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 STAG3L2P0CL84 134 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 SLC2A1P11166 492 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 PSMA1P25786 263 aaKnown RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 CD200P41217 278 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 MAGEA12P43365 314 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 MP68P56378 58 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 RWDD2BP57060 319 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 RAB38P57729 211 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 KRTAP10-4P60372 401 aaPredicted RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 GABARAPL2P60520 117 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 SKP2Q13309 424 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 OR8G1Q15617 311 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 TRIP13Q15645 432 aaPredicted RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 HSP90AA4PQ58FG1 418 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 SDIM1Q6ZPB5 146 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 ZNF767PQ75MW2 155 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 LINC00523Q86TU6 105 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 NAA40Q86UY6 237 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 NIT1Q86X76 327 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 CNPY4Q8N129 248 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 FAM58AQ8N1B3 248 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 SLC25A45Q8N413 288 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 KRTCAP2Q8N6L1 136 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 ASCC1Q8N9N2 400 aaKnown RBP0.43□□□□□ -2.34
SRP54-207ENST00000555535 OR52K2Q8NGK3 314 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 OR6N2Q8NGY6 317 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 OR4X1Q8NH49 305 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 ZNF563Q8TA94 476 aa0.43□□□□□ -2.34
SRP54-207ENST00000555535 CACNG8Q8WXS5 425 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms