RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 MOB1BQ7L9L4 216 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 GAPTQ8N292 157 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 ABHD12Q8N2K0 398 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 OR52M1Q8NGK5 317 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 OR13A1Q8NGR1 328 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 OR9G1Q8NH87 305 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 NDNFQ8TB73 568 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 MRGPRDQ8TDS7 321 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 KIRREL1Q96J84 757 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 IDI2-AS1Q9NZ38 188 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 PITPNC1Q9UKF7 332 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 PEX16Q9Y5Y5 336 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 CUBNO60494 3623 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 MEX3AA1L020 520 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 POM121CA8CG34 1229 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 LEUTXA8MZ59 168 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 SPINT2O43291 252 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 GPR137BO60478 399 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 CGB3P0DN86 165 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 CGB7P0DN87 165 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 RAB3BP20337 219 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 C17orf58Q2M2W7 97 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 TPRA1Q86W33 373 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 SSX3Q99909 188 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 RIMS4Q9H426 269 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 DPM3Q9P2X0 92 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 TRAPPC2LQ9UL33 140 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 AK6Q9Y3D8 172 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 MMP24Q9Y5R2 645 aa11.67□□□□□ -0.54
CCDC88C-207ENST00000554051 FAM181BA6NEQ2 426 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 IFITM5A6NNB3 132 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 H3BUX3 64 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 TMEM127O75204 238 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 CHATP28329 748 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 SSTR5P35346 364 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 RAG2P55895 527 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 QRFPP83859 136 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 UNC119Q13432 240 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 NEDD8Q15843 81 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 HLA-DRB5Q30154 266 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 AWAT1Q58HT5 328 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 NKAPLQ5M9Q1 402 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 C22orf42Q6IC83 251 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 C8orf31Q8N9H6 132 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 TSPAN14Q8NG11 270 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 OR56B1Q8NGI3 324 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 OR4P4Q8NGL7 312 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 FAM3DQ96BQ1 224 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 RANBP3Q9H6Z4 567 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 ZNF696Q9H7X3 374 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 BEX1Q9HBH7 125 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 KCNIP1Q9NZI2 227 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 MGAT4AQ9UM21 535 aa11.66□□□□□ -0.54
CCDC88C-207ENST00000554051 F2RL2O00254 374 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 IGLV1-47P01700 117 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 MT-ND4P03905 459 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 RAB6AP20340 208 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 OMGP23515 440 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 NFYBP25208 207 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 IL3RAP26951 378 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 BRS3P32247 399 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 ARL6IP1Q15041 203 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 P2RY14Q15391 338 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 C3orf56Q8N813 242 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 PTX4Q96A99 478 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 KCTD7Q96MP8 289 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 GFI1Q99684 422 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 MMP28Q9H239 520 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 TXNL4BQ9NX01 149 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 HSF4Q9ULV5 492 aa11.65□□□□□ -0.54
CCDC88C-207ENST00000554051 NOTOA8MTQ0 251 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 MMP23AO75900 390 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 SCGNO76038 276 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 LPLP06858 475 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 MNDAP41218 407 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 SCAND1P57086 179 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 SSX2Q16385 188 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 SIGIRRQ6IA17 410 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 C11orf88Q6PI97 169 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 C16orf82Q7Z2V1 217 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 LHFPL4Q7Z7J7 247 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 FAM89BQ8N5H3 189 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 OR51D1Q8NGF3 324 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 OR4C13Q8NGP0 309 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 ARL11Q969Q4 196 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 AJUBAQ96IF1 538 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 AKR1E2Q96JD6 320 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 NPFFR1Q9GZQ6 430 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 LPAR5Q9H1C0 372 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 ZNF286AQ9HBT8 521 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 TNFRSF19Q9NS68 423 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 MBNL3Q9NUK0 354 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 PLEKHJ1Q9NW61 149 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 ZNF581Q9P0T4 197 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 RAB22AQ9UL26 194 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 TCF19Q9Y242 345 aa11.64□□□□□ -0.55
CCDC88C-207ENST00000554051 METTL21EPA6NDL7 271 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 C15orf65H3BRN8 121 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 BUB1B-PAK6H3BSN5 160 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 J3QR06 171 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms