RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 RNF141Q8WVD5 230 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 C10orf35Q96D05 121 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 SPACA5Q96QH8 159 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 KRT84Q9NSB2 600 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 ARL8BQ9NVJ2 186 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 VSIG4Q9Y279 399 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 ALMS1Q8TCU4 4167 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 TRAV39A0A0B4J263 110 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 MAGEA13PA6NCF6 341 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 H0YJX3 145 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 GNGT2O14610 69 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 MOSP00540 346 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 OR5H8P0DN80 308 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 RAP2AP10114 183 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 MYF6P23409 242 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 PPIFP30405 207 aaKnown RBP8.09□□□□□ -1.11
VPS29-208ENST00000550267 SSTR5P35346 364 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 SOX6P35712 828 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 KIR3DL2P43630 455 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 F2RL1P55085 397 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 ZP1P60852 638 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 ISL1P61371 349 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 MS4A2Q01362 244 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 TMEM65Q6PI78 240 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 HAPLN4Q86UW8 402 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 FAM71E2Q8N5Q1 922 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 TMEM104Q8NE00 496 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 MRGPRDQ8TDS7 321 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 ARPC1AQ92747 370 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 ST6GALNAC6Q969X2 333 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 FGGYQ96C11 551 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 OPALINQ96PE5 141 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 SPATA25Q9BR10 227 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 ALX4Q9H161 411 aaPredicted RBP8.09□□□□□ -1.11
VPS29-208ENST00000550267 LINC00574Q9H8X3 128 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 NEK6Q9HC98 313 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 TAGLN3Q9UI15 199 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 WSB1Q9Y6I7 421 aa8.09□□□□□ -1.11
VPS29-208ENST00000550267 METTL15A6NJ78 407 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 G3V318 75 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 OCM2P0CE71 109 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 OCMP0CE72 109 aaPredicted RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 UBCP0CG48 685 aaKnown RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 CD1BP29016 333 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 CRISP1P54107 249 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 PAN3Q58A45 887 aaKnown RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 AADACL4Q5VUY2 407 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 ACSM6Q6P461 480 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 SLC16A12Q6ZSM3 486 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 UTS2BQ765I0 119 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 PLPPR1Q8TBJ4 325 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 RTN4IP1Q8WWV3 396 aaPredicted RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 SPSB1Q96BD6 273 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 GHITMQ9H3K2 345 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 NDE1Q9NXR1 346 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 H2AFY2Q9P0M6 372 aaPredicted RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 ZNF107Q9UII5 783 aaPredicted RBP8.08□□□□□ -1.12
VPS29-208ENST00000550267 ZNF580Q9UK33 172 aa8.08□□□□□ -1.12
VPS29-208ENST00000550267 TRAV24A0A0B4J272 114 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 A0A1W2PQL4 384 aaPredicted RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 A8MZ25 164 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 LINC01619G3V211 115 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 APOL3O95236 402 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 SLC2A2P11168 524 aaPredicted RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 ANXA8P13928 327 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 ZNF20P17024 532 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 RAB9AP51151 201 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 PTGES3Q15185 160 aaKnown RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 RSBN1Q5VWQ0 802 aaPredicted RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 NXNL2Q5VZ03 156 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 LYPD6Q86Y78 171 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 SGPP2Q8IWX5 399 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 SAXO1Q8IYX7 474 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 ADGRG5Q8IZF4 528 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 TCEANCQ8N8B7 351 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 OR10A7Q8NGE5 316 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 OR8H1Q8NGG4 311 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 OR13C9Q8NGT0 318 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 NR1H4Q96RI1 486 aaPredicted RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 BARHL1Q9BZE3 327 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 OR51J1Q9H342 316 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 NCOR1P1Q9H4R4 102 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 RHOFQ9HBH0 211 aa8.07□□□□□ -1.12
VPS29-208ENST00000550267 ARGLU1Q9NWB6 273 aaPredicted RBP8.07□□□□□ -1.12
VPS29-208ENST00000550267 IGHV4OR15-8A0A075B7B6 117 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 A0A087WW49 117 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 RBMY1BA6NDE4 496 aaKnown RBP8.06□□□□□ -1.12
VPS29-208ENST00000550267 RBMY1EA6NEQ0 496 aaKnown RBP8.06□□□□□ -1.12
VPS29-208ENST00000550267 ATP6V0E1O15342 81 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 IFNA6P05013 189 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 OR8U9P0C7N5 309 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 RBMY1DP0C7P1 496 aaKnown RBP8.06□□□□□ -1.12
VPS29-208ENST00000550267 PITPNAQ00169 270 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 TRIM25Q14258 630 aaKnown RBP8.06□□□□□ -1.12
VPS29-208ENST00000550267 HAGHQ16775 308 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 LINC00311Q8N616 119 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 OR10AC1Q8NH08 325 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 UBALD1Q8TB05 177 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 CNIH3Q8TBE1 160 aa8.06□□□□□ -1.12
VPS29-208ENST00000550267 TMEM163Q8TC26 289 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms