RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DCUN1D4Q92564 292 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 HSPB9Q9BQS6 159 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 ZCCHC4Q9H5U6 513 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 RAB9BQ9NP90 201 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 PLSCR3Q9NRY6 295 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 TRAV24A0A0B4J272 114 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ZAR1LA6NP61 321 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 SDCBPO00560 298 aaPredicted RBP13.14□□□□□ -0.31
VPS29-204ENST00000548259 MAGEB3O15480 346 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 OR8U9P0C7N5 309 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 DAPP51397 102 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ELP2Q6IA86 826 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ADAMTSL5Q6ZMM2 481 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 SGPP2Q8IWX5 399 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ST6GALNAC6Q969X2 333 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 EME1Q96AY2 570 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 OR5B12Q96R08 314 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 OR4C12Q96R67 309 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 GNB4Q9HAV0 340 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ZNF446Q9NWS9 450 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 ERGIC3Q9Y282 383 aa13.14□□□□□ -0.31
VPS29-204ENST00000548259 MRPS28Q9Y2Q9 187 aaKnown RBP13.14□□□□□ -0.31
VPS29-204ENST00000548259 FKBP6O75344 327 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 IFNA6P05013 189 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 HTR1AP08908 422 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 CCR9P51686 369 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 GALEQ14376 348 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 RSU1Q15404 277 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 SRSF7Q16629 238 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS29-204ENST00000548259 Q3ZCU0 254 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 LYPD6Q86Y78 171 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 SERPINA12Q8IW75 414 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 TMEM104Q8NE00 496 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 IL17DQ8TAD2 202 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 ARL11Q969Q4 196 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 MYCBPQ99417 103 aaPredicted RBP13.13□□□□□ -0.31
VPS29-204ENST00000548259 GPER1Q99527 375 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 EDA2RQ9HAV5 297 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 FRRS1LQ9P0K9 344 aa13.13□□□□□ -0.31
VPS29-204ENST00000548259 DNAH1Q9P2D7 4330 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 TMEM30CPA0ZSE6 113 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 TRIM64CA6NLI5 447 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 LINC01619G3V211 115 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 SULT1B1O43704 296 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 CSTBP04080 98 aaKnown RBP13.12□□□□□ -0.31
VPS29-204ENST00000548259 RAB9AP51151 201 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 GNB1P62873 340 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 PITPNAQ00169 270 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 FLOT2Q14254 428 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 MMDQ15546 238 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 ASPHD1Q5U4P2 390 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 ZNF691Q5VV52 312 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 FDX2Q6P4F2 183 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 PXT1Q8NFP0 134 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 MRPL48Q96GC5 212 aaKnown RBP13.12□□□□□ -0.31
VPS29-204ENST00000548259 SPATA25Q9BR10 227 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 THTPAQ9BU02 230 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 DPCDQ9BVM2 203 aaPredicted RBP13.12□□□□□ -0.31
VPS29-204ENST00000548259 KLK15Q9H2R5 256 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 WSB1Q9Y6I7 421 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 LYSTQ99698 3801 aa13.12□□□□□ -0.31
VPS29-204ENST00000548259 IGHV4-30-4P0DP06 118 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 MYF6P23409 242 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 PPIFP30405 207 aaKnown RBP13.11□□□□□ -0.31
VPS29-204ENST00000548259 TMEM30BQ3MIR4 351 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 OR8J1Q8NGP2 316 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 PLPPR1Q8TBJ4 325 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 DLX4Q92988 240 aaPredicted RBP13.11□□□□□ -0.31
VPS29-204ENST00000548259 ELOVL1Q9BW60 279 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 PARP11Q9NR21 331 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 GFOD1Q9NXC2 390 aa13.11□□□□□ -0.31
VPS29-204ENST00000548259 TRAV41A0A0B4J266 112 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 DAPL1A0PJW8 107 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 G3V2T6 193 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 ARPC1BO15143 372 aaKnown RBP13.1□□□□□ -0.31
VPS29-204ENST00000548259 ORC5O43913 435 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 IGLV1-40P01703 118 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 SLC2A2P11168 524 aaPredicted RBP13.1□□□□□ -0.31
VPS29-204ENST00000548259 F2RL1P55085 397 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 ZNF85Q03923 595 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 ZSCAN26Q16670 478 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 ACSM6Q6P461 480 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 STX19Q8N4C7 294 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 SUMF2Q8NBJ7 301 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 OR51A4Q8NGJ6 313 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 TNFAIP8L1Q8WVP5 186 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 FAM192AQ9GZU8 254 aa13.1□□□□□ -0.31
VPS29-204ENST00000548259 TRAV39A0A0B4J263 110 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 ZNF736B4DX44 427 aaPredicted RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 SLC16A6O15403 523 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 SPINT2O43291 252 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 MITFO75030 526 aaPredicted RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 OR7C1O76099 320 aaPredicted RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 EPHA2P29317 976 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 KIAA0141Q14154 515 aaPredicted RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 SLC25A48Q6ZT89 311 aaKnown RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 SATL1Q86VE3 508 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 ZDHHC13Q8IUH4 622 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 OR10AC1Q8NH08 325 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 ARPC1AQ92747 370 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms