RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 ASCC1Q8N9N2 400 aaKnown RBP11.3□□□□□ -0.6
PTCH1-215ENST00000547672 ZBTB34Q8NCN2 500 aa11.3□□□□□ -0.6
PTCH1-215ENST00000547672 OR6C3Q9NZP0 311 aa11.3□□□□□ -0.6
PTCH1-215ENST00000547672 PIPOXQ9P0Z9 390 aa11.3□□□□□ -0.6
PTCH1-215ENST00000547672 POLEQ07864 2286 aa11.3□□□□□ -0.6
PTCH1-215ENST00000547672 ZFHX4Q86UP3 3567 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SHANK1Q9Y566 2161 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 IGHV3-64DA0A0J9YX35 117 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 NKX2-6A6NCS4 301 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 NKX6-3A6NJ46 265 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 RNF212BA8MTL3 300 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 MPPED1O15442 326 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 NDUFA2O43678 99 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 CLDN14O95500 239 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SNRPD2P62316 118 aaKnown RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 BAMBIQ13145 260 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 ATXN7L3Q14CW9 347 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SLC9A3R2Q15599 337 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 TMEM30BQ3MIR4 351 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 TMEM65Q6PI78 240 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 H1FOOQ8IZA3 346 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 LRTM2Q8N967 370 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 BOLLQ8N9W6 283 aaKnown RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 GRPEL2Q8TAA5 225 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 THAP6Q8TBB0 222 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 PLPPR1Q8TBJ4 325 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 TMEM230Q96A57 120 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SDSLQ96GA7 329 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 C2orf50Q96LR7 162 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 ZNF665Q9H7R5 613 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SAP30LQ9HAJ7 183 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 TAF9BQ9HBM6 251 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 SLC2A9Q9NRM0 540 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 CISD1Q9NZ45 108 aaKnown RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 HSPB11Q9Y547 144 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 RBM7Q9Y580 266 aaKnown RBP11.29□□□□□ -0.6
PTCH1-215ENST00000547672 CELSR3Q9NYQ7 3312 aa11.29□□□□□ -0.6
PTCH1-215ENST00000547672 DUXBA0A1W2PPF3 345 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 FAM25EA8MYX2 175 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 E7EQL1 145 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 K7N7A8 449 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 PSPNO60542 156 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 HEXAP06865 529 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 SLC25A4P12235 298 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 RCC1P18754 421 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-215ENST00000547672 PI3P19957 117 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 NUP62P37198 522 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-215ENST00000547672 OR3A1P47881 315 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 H2BFSP57053 126 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 SUPT4H1P63272 117 aaKnown RBP11.28□□□□□ -0.6
PTCH1-215ENST00000547672 HTD2P86397 168 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 IGFBP7Q16270 282 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 NDUFA5Q16718 116 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 TEX36Q5VZQ5 186 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 PCSK4Q6UW60 755 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 OR10V1Q8NGI7 309 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 LINC01560Q8TB33 94 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 SECTM1Q8WVN6 248 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 IL1F10Q8WWZ1 152 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 TMEM246Q9BRR3 403 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 TOLLIPQ9H0E2 274 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 FXYD6Q9H0Q3 95 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 EPG5Q9HCE0 2579 aa11.28□□□□□ -0.6
PTCH1-215ENST00000547672 A0A0D9SG52 128 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 C3orf85A0A1B0GTC6 90 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 C13orf42A0A1B0GVH6 325 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 LGALS8O00214 317 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 GOSR1O95249 250 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 FSTL3O95633 263 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 RLN2P04090 185 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 WNT2P09544 360 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 RPS2P15880 293 aaKnown RBP11.27□□□□□ -0.61
PTCH1-215ENST00000547672 PSMB6P28072 239 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 GNRHRP30968 328 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 CEACAM6P40199 344 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 AESQ08117 197 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 CR1LQ2VPA4 569 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 ZNF672Q499Z4 452 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-215ENST00000547672 C20orf204Q6ZNR8 217 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 LIAT1Q6ZQX7 453 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 CD177Q8N6Q3 437 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 BVESQ8NE79 360 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 ANGPTL6Q8NI99 470 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 LPAR3Q9UBY5 353 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 KIF25Q9UIL4 384 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 UBE2J1Q9Y385 318 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-215ENST00000547672 TMED3Q9Y3Q3 217 aa11.27□□□□□ -0.61
PTCH1-215ENST00000547672 IGKV1D-17A0A075B6S4 117 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 SMLR1H3BR10 107 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-215ENST00000547672 L7N2F9 121 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 RGS13O14921 159 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 ATXN7O15265 892 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-215ENST00000547672 ZNF737O75373 536 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 SIX6O95475 246 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 CCL8P80075 99 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 HERPUD1Q15011 391 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 PHLDA2Q53GA4 152 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 LY6G6FQ5SQ64 297 aa11.26□□□□□ -0.61
PTCH1-215ENST00000547672 ZNF546Q86UE3 836 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms