RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MT-ND4LP03901 98 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 METTL15P1P0C7V9 234 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 TAGLN2P37802 199 aaKnown RBP12.85□□□□□ -0.35
USP28-214ENST00000545540 ERVS71-1P61550 626 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 CLEC12BQ2HXU8 276 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 TMEM211Q6ICI0 200 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 ALKBH2Q6NS38 261 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 SPSB3Q6PJ21 355 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 Q6ZSR3 168 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 PLPPR2Q96GM1 343 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 GNG13Q9P2W3 67 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 PRSS44E7EML9 344 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 H3BQ15 152 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 WDR1O75083 606 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 LINC00205P59089 165 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 PCBD1P61457 104 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 DCAF12Q5T6F0 453 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 IL22RA1Q8N6P7 574 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 RAB39BQ96DA2 213 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 IFT22Q9H7X7 185 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 KCNS2Q9ULS6 477 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 PCSK5Q92824 1860 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 ZDHHC23Q8IYP9 409 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 DEFB127Q9H1M4 99 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 FOXJ2Q9P0K8 574 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 HSPA12AO43301 675 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 PGLYRP1O75594 196 aaPredicted RBP12.84□□□□□ -0.35
USP28-214ENST00000545540 OR8U8P0C7N1 319 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 GFRA1P56159 465 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 ABLIM2Q6H8Q1 611 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 MKXQ8IYA7 352 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 REPIN1Q9BWE0 567 aaKnown RBP12.84□□□□□ -0.35
USP28-214ENST00000545540 C1QTNF5Q9BXJ0 243 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 TAAR3PQ9P1P4 343 aa12.84□□□□□ -0.35
USP28-214ENST00000545540 DEFA4P12838 97 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 ALKBH6Q3KRA9 238 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 LRTM2Q8N967 370 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 KCNE4Q8WWG9 221 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 ADGRG4Q8IZF6 3080 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 TGIF2-C20orf24A0A0A6YYL0 155 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 PQLC2LA1A4F0 135 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 CD300LBA8K4G0 201 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 CYTIPO60759 359 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 S100A9P06702 114 aaKnown RBP12.83□□□□□ -0.36
USP28-214ENST00000545540 CELA3BP08861 270 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 CXCL1P09341 107 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 NDUFA6P56556 154 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 UBE2KP61086 200 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 PLGLB1Q02325 96 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 SPINK9Q5DT21 86 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 GPR146Q96CH1 333 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 HIST1H2AAQ96QV6 131 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 PBDC1Q9BVG4 233 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 PLEKHF2Q9H8W4 249 aa12.83□□□□□ -0.36
USP28-214ENST00000545540 CLN5O75503 358 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 NEURL1O76050 574 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 ELLP55199 621 aaPredicted RBP12.82□□□□□ -0.36
USP28-214ENST00000545540 CMTM1Q8IZ96 169 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 ZNF561Q8N587 486 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 PLPPR1Q8TBJ4 325 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 OR14J1Q9UGF5 321 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 SERPINE2P07093 398 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 PAX9P55771 341 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 RPL23AP62750 156 aaKnown RBP12.82□□□□□ -0.36
USP28-214ENST00000545540 DLK1P80370 383 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 AKR1C8PQ5T2L2 129 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 GFI1BQ5VTD9 330 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 OR1J1Q8NGS3 322 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 TRAV24A0A0B4J272 114 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 LAMTOR5O43504 91 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 TUSC2O75896 110 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 WISP2O76076 250 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 SLC34A2O95436 690 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 CDS2O95674 445 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 RAB11AP62491 216 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 ARL16Q0P5N6 197 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 ZNF674Q2M3X9 581 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 C6orf15Q6UXA7 325 aaPredicted RBP12.82□□□□□ -0.36
USP28-214ENST00000545540 BEND4Q6ZU67 534 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 OR2M7Q8NG81 312 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 ZNF665Q9H7R5 613 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 LYRM2Q9NU23 88 aaPredicted RBP12.82□□□□□ -0.36
USP28-214ENST00000545540 CACNG5Q9UF02 275 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 MIOXQ9UGB7 285 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 TECTAO75443 2155 aa12.82□□□□□ -0.36
USP28-214ENST00000545540 FABP1P07148 127 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 AGAP20933 346 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 BMP5P22003 454 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 FGF12P61328 243 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 TMPRSS7Q7RTY8 843 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 ZNF429Q86V71 674 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 WDR5BQ86VZ2 330 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 GCNT2Q8N0V5 402 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 GSN-AS1Q9NRJ2 163 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 IL17BQ9UHF5 180 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 ATPIF1Q9UII2 106 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 NAPSAO96009 420 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 WNT5AP41221 380 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 ERVFRD-1P60508 538 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 KIAA0141Q14154 515 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms