RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	SLC25A24	Q6NUK1	477 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	PCSK4	Q6UW60	755 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	TCTEX1D1	Q8N7M0	179 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZFP62	Q8NB50	900 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	TMEM178A	Q8NBL3	297 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	BCL2L2	Q92843	193 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	HIST1H2BA	Q96A08	127 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	PARD6G	Q9BYG4	376 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	MMP24	Q9Y5R2	645 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	UNC80	Q8N2C7	3258 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	FAM166B	A8MTA8	275 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	SH2D1B	O14796	132 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF205	O95201	554 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	AGA	P20933	346 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	MEOX1	P50221	254 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	SERF2	P84101	59 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	HERPUD1	Q15011	391 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669		Q6ZPA2	131 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	C1QL4	Q86Z23	238 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	C1orf174	Q8IYL3	243 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	PINX1	Q96BK5	328 aa	Known RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	BSCL2	Q96G97	398 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	CLCC1	Q96S66	551 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	PSMG3	Q9BT73	122 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF552	Q9H707	407 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	SIRT7	Q9NRC8	400 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	DLL3	Q9NYJ7	618 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	EML6	Q6ZMW3	1958 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	TGOLN2	O43493	480 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	LY86	O95711	162 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	RAC2	P15153	192 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF14	P17017	642 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	RAB5A	P20339	215 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	DYNLT3	P51808	116 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	MDS2	Q8NDY4	140 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	SH3BGRL3	Q9H299	93 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	COA4	Q9NYJ1	87 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	KCNIP1	Q9NZI2	227 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	ERRFI1	Q9UJM3	462 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	FBXO7	Q9Y3I1	522 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	RNF115	Q9Y4L5	304 aa		11.12	□□□□□ -0.63
CPSF7-223	ENST00000544669	TRAV24	A0A0B4J272	114 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	SYNGR1	O43759	233 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	NDUFS6	O75380	124 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	MT-CO3	P00414	261 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	PDGFB	P01127	241 aa	Predicted RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	NGF	P01138	241 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	SMIM6	P0DI80	62 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	TAGLN2	P37802	199 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	RPL35	P42766	123 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	ID4	P47928	161 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	MEOX2	P50222	304 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	UBE2N	P61088	152 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF506	Q5JVG8	444 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	C9orf135	Q5VTT2	229 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	CLEC9A	Q6UXN8	241 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	FAM216A	Q8WUB2	273 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	C12orf57	Q99622	126 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	PARP12	Q9H0J9	701 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	CDH20	Q9HBT6	801 aa		11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	RBM7	Q9Y580	266 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-223	ENST00000544669	TRGV5	A0A0B4J1U4	118 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	IGKV1D-13	A0A0B4J2D9	117 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	IGKV1-6	A0A0C4DH72	117 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	HS3ST1	O14792	307 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	TXNL1	O43396	289 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	IGKV1-13	P0DP09	117 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	CD82	P27701	267 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	SOX8	P57073	446 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	PNRC1	Q12796	327 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	PMS2P11	Q13670	270 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF146	Q15072	292 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	INO80C	Q6PI98	192 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	SLC35E3	Q7Z769	313 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	SUMF1	Q8NBK3	374 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	FGF23	Q9GZV9	251 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	PRDM6	Q9NQX0	595 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	TAAR3P	Q9P1P4	343 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	METTL1	Q9UBP6	276 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	TRAPPC2L	Q9UL33	140 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	WIPI2	Q9Y4P8	454 aa		11.1	□□□□□ -0.63
CPSF7-223	ENST00000544669	C5orf52	A6NGY3	159 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	UBE2C	O00762	179 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	SYNGR2	O43760	224 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	IFNA1	P01562	189 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	CELA3A	P09093	270 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	CCL2	P13500	99 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	OMG	P23515	440 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	MZT1	Q08AG7	82 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	ATP6V1F	Q16864	119 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	AKIRIN2	Q53H80	203 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF497	Q6ZNH5	498 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	LINC00696	Q6ZRV3	163 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	PLPPR1	Q8TBJ4	325 aa		11.09	□□□□□ -0.63
CPSF7-223	ENST00000544669	TCTEX1D2	Q8WW35	142 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 103 ms