RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 DPCDQ9BVM2 203 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-213ENST00000541953 FAM192AQ9GZU8 254 aa12.08□□□□□ -0.48
CLSTN3-213ENST00000541953 NCOR1P1Q9H4R4 102 aa12.08□□□□□ -0.48
CLSTN3-213ENST00000541953 IMPAD1Q9NX62 359 aa12.08□□□□□ -0.48
CLSTN3-213ENST00000541953 SEC14L6B5MCN3 397 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 AP4M1O00189 453 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 EI24O14681 340 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 HTR3BO95264 441 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 ALPLP05186 524 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 NHLRC4P0CG21 123 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 SOX2P48431 317 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 F2RL1P55085 397 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 SNRPGP62308 76 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 FHL3Q13643 280 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 KIR2DS1Q14954 304 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 PNLIPRP3Q17RR3 467 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 SLC25A30Q5SVS4 291 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 C5orf24Q7Z6I8 188 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 SATL1Q86VE3 508 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 SERPINA12Q8IW75 414 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 Q8NFD4 153 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 CCDC107Q8WV48 283 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 TSEN15Q8WW01 171 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 RTN4IP1Q8WWV3 396 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 S1PR3Q99500 378 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 BARHL1Q9BZE3 327 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 AMBNQ9NP70 447 aa12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 LIN7CQ9NUP9 197 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-213ENST00000541953 GEMIN2O14893 280 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 RAMP3O60896 148 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 CDX1P47902 265 aaPredicted RBP12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 FOXE3Q13461 319 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 GALEQ14376 348 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 C9orf66Q5T8R8 295 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 C1orf146Q5VVC0 180 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 ASCL4Q6XD76 172 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 FAM71E2Q8N5Q1 922 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 OR5D14Q8NGL3 314 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 OR5M8Q8NGP6 311 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 OR8U1Q8NH10 309 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 KLK15Q9H2R5 256 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 GNB4Q9HAV0 340 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 GFOD1Q9NXC2 390 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 DHDHQ9UQ10 334 aa12.06□□□□□ -0.48
CLSTN3-213ENST00000541953 MAGEA13PA6NCF6 341 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 OR7C1O76099 320 aaPredicted RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 GAPDHP04406 335 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 FCGR1AP12314 374 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 PSMB8P28062 276 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 VHLP40337 213 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 ZNF134P52741 427 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 RBM11P57052 281 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 DCTN2Q13561 401 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 KIAA0141Q14154 515 aaPredicted RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 RSU1Q15404 277 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 CXorf66Q5JRM2 361 aaPredicted RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 LINC00311Q8N616 119 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 ZNF439Q8NDP4 499 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 OR10A7Q8NGE5 316 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 OR2T10Q8NGZ9 312 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 OR5AK2Q8NH90 309 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 MYOZ3Q8TDC0 251 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 TRUB1Q8WWH5 349 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 PYDC1Q8WXC3 89 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 ARL11Q969Q4 196 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 GPER1Q99527 375 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 JAM3Q9BX67 310 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 ERVK13-1Q9NX77 482 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 ST3GAL6Q9Y274 331 aa12.05□□□□□ -0.48
CLSTN3-213ENST00000541953 TMEM212A6NML5 194 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 SDCBPO00560 298 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 IGHG4P01861 327 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 SLC2A2P11168 524 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 RAB3AP20336 220 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 ZNF260Q3ZCT1 412 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 SLC16A12Q6ZSM3 486 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 SYS1Q8N2H4 156 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 OR13C5Q8NGS8 318 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 C4orf3Q8WVX3 66 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 RITA1Q96K30 269 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 KCTD7Q96MP8 289 aa12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 SIRT4Q9Y6E7 314 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-213ENST00000541953 TMEM30CPA0ZSE6 113 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 C12orf77C9JDV5 145 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 G3V318 75 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 H3BNX3 289 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 MPZL2O60487 215 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 ELANEP08246 267 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 SERPINA2P20848 420 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 MYF6P23409 242 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 CNTFRP26992 372 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 KCNJ3P48549 501 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 GNB1P62873 340 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 MEDAGQ5VYS4 303 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 SBSPONQ8IVN8 264 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 OR11H1Q8NG94 326 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 OR10V1Q8NGI7 309 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 OR52I1Q8NGK6 324 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 OR5B12Q96R08 314 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 IFT22Q9H7X7 185 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms