RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 AMDHD2Q9Y303 409 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 K7EPK0 472 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 GPR31O00270 319 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 SLC33A1O00400 549 aaPredicted RBP11.68□□□□□ -0.54
RTN3-210ENST00000540798 HS3ST1O14792 307 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 PHF1O43189 567 aaPredicted RBP11.68□□□□□ -0.54
RTN3-210ENST00000540798 FAM157CP0CG43 387 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 ZNF324BQ6AW86 544 aaPredicted RBP11.68□□□□□ -0.54
RTN3-210ENST00000540798 FAM71E2Q8N5Q1 922 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 NEK7Q8TDX7 302 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 DNASE2O00115 360 aaPredicted RBP11.68□□□□□ -0.54
RTN3-210ENST00000540798 DEGS1O15121 323 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 WDR1O75083 606 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 AGFG2O95081 481 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 WNT2P09544 360 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 HFEQ30201 348 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 ZNF497Q6ZNH5 498 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 TBC1D26Q86UD7 250 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 CXorf67Q86X51 503 aaPredicted RBP11.68□□□□□ -0.54
RTN3-210ENST00000540798 OR4D5Q8NGN0 318 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 RDH5Q92781 318 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 TLNRD1Q9H1K6 362 aa11.68□□□□□ -0.54
RTN3-210ENST00000540798 KITLGP21583 273 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 PTAFRP25105 342 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 RPL12P30050 165 aaKnown RBP11.67□□□□□ -0.54
RTN3-210ENST00000540798 P2RY6Q15077 328 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 ZNF585AQ6P3V2 769 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 DMRTC2Q8IXT2 367 aaPredicted RBP11.67□□□□□ -0.54
RTN3-210ENST00000540798 H1FOOQ8IZA3 346 aaPredicted RBP11.67□□□□□ -0.54
RTN3-210ENST00000540798 SLC35G3Q8N808 338 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 ZNF610Q8N9Z0 462 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 OR8G5Q8NG78 346 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 PLEKHA2Q9HB19 425 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 MLXQ9UH92 298 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 H0YL77 283 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 MLNRO43193 412 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 OR2H2O95918 312 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 CECR9P0C854 216 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 HOXC12P31275 282 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 SMCO1Q147U7 214 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 SPIN3Q5JUX0 258 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 RBMS3Q6XE24 437 aaKnown RBP11.67□□□□□ -0.54
RTN3-210ENST00000540798 MOB1BQ7L9L4 216 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 C11orf53Q8IXP5 236 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 ZFP82Q8N141 532 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 FAM122AQ96E09 287 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 SPOCK3Q9BQ16 436 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 C11orf1Q9H5F2 150 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 ZFP57Q9NU63 452 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 PURGQ9UJV8 347 aaKnown RBP11.67□□□□□ -0.54
RTN3-210ENST00000540798 PROCRQ9UNN8 238 aa11.67□□□□□ -0.54
RTN3-210ENST00000540798 E5RGE8 158 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 GAPDHP04406 335 aaKnown RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 TMEM268Q5VZI3 342 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 PLPPR1Q8TBJ4 325 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 NSG2Q9Y328 171 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 DUXBA0A1W2PPF3 345 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 CLEC18AA5D8T8 446 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 CDS2O95674 445 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 RCC1P18754 421 aaPredicted RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 NHLH1Q02575 133 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 OR8G1Q15617 311 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 CLEC18CQ8NCF0 446 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 OR52M1Q8NGK5 317 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 CA5BP1Q8WTZ4 195 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 RNF141Q8WVD5 230 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 SECTM1Q8WVN6 248 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 OPN3Q9H1Y3 402 aaPredicted RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 ZDHHC8Q9ULC8 765 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 WIPI2Q9Y4P8 454 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 IGHV1-18A0A0C4DH31 117 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 CDIPTO14735 213 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 UCP1P25874 307 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 MBNL2Q5VZF2 373 aaKnown RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 C1orf174Q8IYL3 243 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 SELENOHQ8IZQ5 122 aaKnown RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 MBNL3Q9NUK0 354 aaKnown RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 OR2W1Q9Y3N9 320 aa11.66□□□□□ -0.54
RTN3-210ENST00000540798 LSM5Q9Y4Y9 91 aaKnown RBP11.66□□□□□ -0.54
RTN3-210ENST00000540798 EIF3GO75821 320 aaKnown RBP eCLIP11.65□□□□□ -0.541e-11■■■□□ 15.7
RTN3-210ENST00000540798 ZNF44P15621 663 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 RPL7L1Q6DKI1 246 aaKnown RBP11.65□□□□□ -0.54
RTN3-210ENST00000540798 TMEM88Q6PEY1 159 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 BHLHA15Q7RTS1 189 aaPredicted RBP11.65□□□□□ -0.54
RTN3-210ENST00000540798 FOXRED2Q8IWF2 684 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 RBMXL3Q8N7X1 1067 aaKnown RBP11.65□□□□□ -0.54
RTN3-210ENST00000540798 PIGMQ9H3S5 423 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 NIT2Q9NQR4 276 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 CCL28Q9NRJ3 127 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 IGHV2OR16-5A0A0B4J2B6 119 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 OR5H1A6NKK0 313 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 LY86O95711 162 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 GLI4P10075 376 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 LMO1P25800 156 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 EIF5AP63241 154 aaKnown RBP11.65□□□□□ -0.54
RTN3-210ENST00000540798 DMBX1Q8NFW5 382 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 TMED6Q8WW62 240 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 EDARADDQ8WWZ3 215 aa11.65□□□□□ -0.54
RTN3-210ENST00000540798 IL22RA2Q969J5 263 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms