RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SNRNP70P08621 437 aaKnown RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 IGHV3-43DP0DP04 118 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 SPINK9Q5DT21 86 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 SLC25A40Q8TBP6 338 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 OR5P3Q8WZ94 311 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 C18orf12Q96KH6 178 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 NRIP2Q9BQI9 281 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 OBP2BQ9NPH6 170 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TREM2Q9NZC2 230 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 KLF13Q9Y2Y9 288 aaPredicted RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 TUSC2O75896 110 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 FAM76BQ5HYJ3 339 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 PLA2G2CQ5R387 149 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 FBXW9Q5XUX1 488 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 MDS2Q8NDY4 140 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 OR1J1Q8NGS3 322 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TMEM171Q8WVE6 324 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TMEM45BQ96B21 275 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TMEM100Q9NV29 134 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 DLL3Q9NYJ7 618 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 SPTAN1Q13813 2472 aaKnown RBP14.38□□□□□ -0.11
USP28-208ENST00000540438 C21orf140B9A014 251 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 DEFB109BQ30KR1 87 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 PRAMEF6Q5VXH4 476 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 DCTN5Q9BTE1 182 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 TRAPPC2LQ9UL33 140 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 MAP1AP78559 2803 aaPredicted RBP14.38□□□□□ -0.11
USP28-208ENST00000540438 CHST1O43916 411 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 SNAPC5O75971 98 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 IGHV1-2P23083 117 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 NKX2-1P43699 371 aaPredicted RBP14.38□□□□□ -0.11
USP28-208ENST00000540438 TMEM211Q6ICI0 200 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 CD300LFQ8TDQ1 290 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 IP6K3Q96PC2 410 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 MMP26Q9NRE1 261 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 TUBD1Q9UJT1 453 aa14.38□□□□□ -0.11
USP28-208ENST00000540438 ABCA4P78363 2273 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 NXPH2O95156 264 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 PVALBP20472 110 aaPredicted RBP14.37□□□□□ -0.11
USP28-208ENST00000540438 UBE2NP61088 152 aaKnown RBP14.37□□□□□ -0.11
USP28-208ENST00000540438 GNMTQ14749 295 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 VHLLQ6RSH7 139 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 Q6ZRM9 215 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 SVBPQ8N300 66 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 OR5C1Q8NGR4 320 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 MRPL30Q8TCC3 161 aaKnown RBP14.37□□□□□ -0.11
USP28-208ENST00000540438 FER1L6-AS2Q96M78 137 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 DNTTIP1Q9H147 329 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 PARD6AQ9NPB6 346 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 BSNQ9UPA5 3926 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 E5RGE8 158 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 M0R036 132 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 TXNL1O43396 289 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 EWSR1Q01844 656 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP28-208ENST00000540438 RTL6Q6ICC9 239 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 SELENOHQ8IZQ5 122 aaKnown RBP14.37□□□□□ -0.11
USP28-208ENST00000540438 SCCPDHQ8NBX0 429 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 GLRX2Q9NS18 164 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 NSG2Q9Y328 171 aa14.37□□□□□ -0.11
USP28-208ENST00000540438 SPTBN4Q9H254 2564 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 ZNF724A8MTY0 619 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 RPRMLQ8N4K4 120 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 TMEM222Q9H0R3 208 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 LYL1P12980 280 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 CBR1P16152 277 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 F2RL1P55085 397 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 HAGHQ16775 308 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 BTNL3Q6UXE8 466 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 OR10J5Q8NHC4 309 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 GTF3AQ92664 365 aaKnown RBP14.36□□□□□ -0.11
USP28-208ENST00000540438 BCL2L2Q92843 193 aaPredicted RBP14.36□□□□□ -0.11
USP28-208ENST00000540438 RSRP1Q9BUV0 290 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 RPS10P5Q9NQ39 176 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 DNAJB11Q9UBS4 358 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 KIAA1324LA8MWY0 1029 aaPredicted RBP14.36□□□□□ -0.11
USP28-208ENST00000540438 H7C1Q1 480 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 OR2H2O95918 312 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 NAPSAO96009 420 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 ARG1P05089 322 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 ARR3P36575 388 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 DYNLT3P51808 116 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 NAAAQ02083 359 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 AESQ08117 197 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 CLRN3Q8NCR9 226 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 SUCNR1Q9BXA5 334 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 FAM234AQ9H0X4 552 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 CDH20Q9HBT6 801 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 DECR2Q9NUI1 292 aa14.36□□□□□ -0.11
USP28-208ENST00000540438 TRDCB7Z8K6 153 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 JTBO76095 146 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 PPP1CBP62140 327 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 VAMP2P63027 116 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 GNG3P63215 75 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 PSG7Q13046 419 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 PCSK4Q6UW60 755 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 OR2C3Q8N628 320 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 GALNT14Q96FL9 552 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 SPACA1Q9HBV2 294 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 PCDHB16Q9NRJ7 776 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 RCC2Q9P258 522 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms