RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 IGHG4P01861 327 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 CHATP28329 748 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 CD1BP29016 333 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 MRPL28Q13084 256 aaKnown RBP10.62□□□□□ -0.71
SS18-204ENST00000539244 PIGYQ3MUY2 71 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 Q3ZCU0 254 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 NHLRC3Q5JS37 347 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 LCNL1Q6ZST4 164 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 OR8H1Q8NGG4 311 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 TNFAIP8L1Q8WVP5 186 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 C4orf3Q8WVX3 66 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 DPCDQ9BVM2 203 aaPredicted RBP10.62□□□□□ -0.71
SS18-204ENST00000539244 FAM118AQ9NWS6 357 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 SORL1Q92673 2214 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 IGHV3-72A0A0B4J1Y9 119 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 TRAV39A0A0B4J263 110 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 SNTNA6NMZ2 147 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 SEC14L6B5MCN3 397 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 C15orf65H3BRN8 121 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 IGF1P05019 195 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 ALPLP05186 524 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 RAB3AP20336 220 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 PSMB8P28062 276 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 ECI1P42126 302 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 REG1BP48304 166 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 ZNF137PP52743 207 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 KLHL22Q53GT1 634 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 FAM71E2Q8N5Q1 922 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 SUMF2Q8NBJ7 301 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 OR5AK2Q8NH90 309 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 MYOZ3Q8TDC0 251 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 RTN4IP1Q8WWV3 396 aaPredicted RBP10.61□□□□□ -0.71
SS18-204ENST00000539244 LGALS12Q96DT0 336 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 S1PR3Q99500 378 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 PDCD1LG2Q9BQ51 273 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 ALG8Q9BVK2 526 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 IL36GQ9NZH8 169 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 DHDHQ9UQ10 334 aa10.61□□□□□ -0.71
SS18-204ENST00000539244 ZNF256Q9Y2P7 627 aaPredicted RBP10.61□□□□□ -0.71
SS18-204ENST00000539244 TMEM30CPA0ZSE6 113 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 MAGEB3O15480 346 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 ORC5O43913 435 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 MOSP00540 346 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 IL3RAP26951 378 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 INSL3P51460 131 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 RSU1Q15404 277 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 LPCAT4Q643R3 524 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 LINC00596Q86U02 117 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 LHFPL3Q86UP9 236 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 OR51A2Q8NGJ7 313 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 OR10K1Q8NGX5 313 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 TSEN15Q8WW01 171 aaKnown RBP10.6□□□□□ -0.71
SS18-204ENST00000539244 GPER1Q99527 375 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 RASL11BQ9BPW5 248 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 HSPB9Q9BQS6 159 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 CHCHD6Q9BRQ6 235 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 ISG20L2Q9H9L3 353 aaKnown RBP10.6□□□□□ -0.71
SS18-204ENST00000539244 GFOD1Q9NXC2 390 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 ZNF581Q9P0T4 197 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 ST3GAL6Q9Y274 331 aa10.6□□□□□ -0.71
SS18-204ENST00000539244 SACSQ9NZJ4 4579 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 SAC3D1A6NKF1 404 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 E9PI62 339 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 SDCBPO00560 298 aaPredicted RBP10.59□□□□□ -0.71
SS18-204ENST00000539244 TXNL1O43396 289 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 OR7C1O76099 320 aaPredicted RBP10.59□□□□□ -0.71
SS18-204ENST00000539244 HTR3BO95264 441 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 OR5H8P0DN80 308 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 GABRB1P18505 474 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 VDAC1P21796 283 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 RBM11P57052 281 aaKnown RBP10.59□□□□□ -0.71
SS18-204ENST00000539244 C1orf146Q5VVC0 180 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 SATL1Q86VE3 508 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 ARL11Q969Q4 196 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 ASCL2Q99929 193 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 JAM3Q9BX67 310 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 FAM192AQ9GZU8 254 aa10.59□□□□□ -0.71
SS18-204ENST00000539244 ZNF736B4DX44 427 aaPredicted RBP10.58□□□□□ -0.72
SS18-204ENST00000539244 SOX6P35712 828 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 VHLP40337 213 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 RUNX1Q01196 453 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 KIAA0141Q14154 515 aaPredicted RBP10.58□□□□□ -0.72
SS18-204ENST00000539244 MPV17LQ2QL34 196 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 TMEM30BQ3MIR4 351 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 ZNF260Q3ZCT1 412 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 CASC10Q5T4H9 136 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 SLC25A48Q6ZT89 311 aaKnown RBP10.58□□□□□ -0.72
SS18-204ENST00000539244 ZNF439Q8NDP4 499 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 OR11H1Q8NG94 326 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 OR52N1Q8NH53 320 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 MUC7Q8TAX7 377 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 RGP1Q92546 391 aaPredicted RBP10.58□□□□□ -0.72
SS18-204ENST00000539244 UBE2E2Q96LR5 201 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 KCTD7Q96MP8 289 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 METTL9Q9H1A3 318 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 ERVK13-1Q9NX77 482 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 TAS2R4Q9NYW5 299 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 SMAD5-AS1Q9Y6J3 95 aa10.58□□□□□ -0.72
SS18-204ENST00000539244 I3L521 148 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 GEMIN2O14893 280 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms