RNA–Protein interactions for RNA: ENST00000536843.5

CHFR-213, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 2,424 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-213	ENST00000536843	TMEM56	Q96MV1	263 aa		13.45	□□□□□ -0.26
CHFR-213	ENST00000536843	MAP1LC3B	Q9GZQ8	125 aa		13.45	□□□□□ -0.26
CHFR-213	ENST00000536843	MAGT1	Q9H0U3	335 aa		13.45	□□□□□ -0.26
CHFR-213	ENST00000536843	PRDM6	Q9NQX0	595 aa		13.45	□□□□□ -0.26
CHFR-213	ENST00000536843	TMEM56-RWDD3	S4R434	201 aa		13.45	□□□□□ -0.26
CHFR-213	ENST00000536843		A0A1W2PPQ1	181 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	C2orf72	A6NCS6	295 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	CEBPZOS	A8MTT3	80 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF705F	A8MVS1	300 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	KBTBD11	O94819	623 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	IFNA1	P01562	189 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF705D	P0CH99	300 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF705B	P0CI00	300 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	OPRM1	P35372	400 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	RAN	P62826	216 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	RPL23	P62829	140 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	RPP30	P78346	268 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF726P1	Q15940	193 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	DMRTC1	Q5HYR2	192 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	COL5A1-AS1	Q5SY13	56 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	CDCP2	Q5VXM1	449 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	FAM57B	Q71RH2	274 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	NUFIP2	Q7Z417	695 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ELOVL1	Q9BW60	279 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	DNAJC4	Q9NNZ3	241 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	YPEL1	O60688	119 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	FCGR2A	P12318	317 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	SRP14	P37108	136 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF41	P51814	821 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ID3	Q02535	119 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	EXT1	Q16394	746 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	LCN15	Q6UWW0	184 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	AGBL5	Q8NDL9	886 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	OR2T10	Q8NGZ9	312 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	YPEL2	Q96QA6	119 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	ELL3	Q9HB65	397 aa	Predicted RBP	13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	RNF150	Q9ULK6	438 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	POLR1D	Q9Y2S0	133 aa		13.44	□□□□□ -0.26
CHFR-213	ENST00000536843	C19orf67	A6NJJ6	358 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	MPPED1	O15442	326 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	WNT5A	P41221	380 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	NPBWR2	P48146	333 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	PRSS8	Q16651	343 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	MAFA	Q8NHW3	353 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	THAP3	Q8WTV1	239 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	C22orf15	Q8WYQ4	148 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	ANAPC16	Q96DE5	110 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	SIGLEC12	Q96PQ1	595 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	REPIN1	Q9BWE0	567 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	OR51I2	Q9H344	312 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	FER1L5	A0AVI2	2057 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	CABIN1	Q9Y6J0	2220 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	IFNA5	P01569	189 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	IGLV3-1	P01715	115 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	WDR74	Q6RFH5	385 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	KMT5C	Q86Y97	462 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	UBALD2	Q8IYN6	164 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	SPEM1	Q8N4L4	309 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	SDSL	Q96GA7	329 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	WFIKKN1	Q96NZ8	548 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	MSL2	Q9HCI7	577 aa		13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	PNRC2	Q9NPJ4	139 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-213	ENST00000536843	FBXW4	P57775	412 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	UBE2N	P61088	152 aa	Known RBP	13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	GABRE	P78334	506 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	LCN2	P80188	198 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	SHB	Q15464	509 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	MRPL13	Q9BYD1	178 aa	Known RBP	13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	RBKS	Q9H477	322 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	VDAC3	Q9Y277	283 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	ADAM20	O43506	726 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	BID	P55957	195 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	SSX7	Q7RTT5	188 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	ZNF695	Q8IW36	515 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	C11orf42	Q8N5U0	333 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	PP6455	Q8WZ26	134 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	LIN37	Q96GY3	246 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	LYZL4	Q96KX0	146 aa		13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	YLPM1	P49750	1951 aa	Known RBP	13.42	□□□□□ -0.26
CHFR-213	ENST00000536843	DUXB	A0A1W2PPF3	345 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	LRRC3C	A6NJW4	275 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	RAB7A	P51149	207 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	FGF8	P55075	233 aa	Predicted RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	PAX9	P55771	341 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	SOX8	P57073	446 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	HERV-K104	P61576	105 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	MRPS34	P82930	218 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	TLE3	Q04726	772 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	ENDOG	Q14249	297 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	NMS	Q5H8A3	153 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	SELENOH	Q8IZQ5	122 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	PLPPR1	Q8TBJ4	325 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	RASL10B	Q96S79	203 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	PSMG3	Q9BT73	122 aa	Predicted RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	EMC6	Q9BV81	110 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	SERINC1	Q9NRX5	453 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	TMEM106B	Q9NUM4	274 aa		13.41	□□□□□ -0.26
CHFR-213	ENST00000536843	COL5A1	P20908	1838 aa	Predicted RBP	13.41	□□□□□ -0.26
CHFR-213	ENST00000536843		E9PLN8	166 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms