RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 APOBEC3DQ96AK3 386 aaPredicted RBP2.76□□□□□ -1.97
PRKDC-208ENST00000536710 CMBLQ96DG6 245 aa2.76□□□□□ -1.97
PRKDC-208ENST00000536710 ZNF230Q9UIE0 474 aaPredicted RBP2.76□□□□□ -1.97
PRKDC-208ENST00000536710 TRIP11Q15643 1979 aa2.76□□□□□ -1.97
PRKDC-208ENST00000536710 GGTLC3B5MD39 225 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 TMEM250H0YL14 139 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 AQP9O43315 295 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 EEF1E1O43324 174 aaKnown RBP2.75□□□□□ -1.97
PRKDC-208ENST00000536710 KRTAP5-9P26371 169 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 SKP1P63208 163 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 SKP2Q13309 424 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 PAFAH1B3Q15102 231 aaKnown RBP2.75□□□□□ -1.97
PRKDC-208ENST00000536710 SLC13A5Q86YT5 568 aaPredicted RBP2.75□□□□□ -1.97
PRKDC-208ENST00000536710 CMTM2Q8TAZ6 248 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 SLC25A44Q96H78 314 aaPredicted RBP2.75□□□□□ -1.97
PRKDC-208ENST00000536710 TRIB3Q96RU7 358 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 OR2D2Q9H210 308 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 SCML1Q9UN30 329 aa2.75□□□□□ -1.97
PRKDC-208ENST00000536710 NID2Q14112 1375 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 RAB3GAP2Q9H2M9 1393 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 K7EQS6 105 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 CBR3O75828 277 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 YEATS4O95619 227 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 CPSF4O95639 269 aaKnown RBP2.74□□□□□ -1.97
PRKDC-208ENST00000536710 ATP6V1G2O95670 118 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 ASS1P00966 412 aaKnown RBP2.74□□□□□ -1.97
PRKDC-208ENST00000536710 F8A1P23610 371 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 STC1P52823 247 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 MMDQ15546 238 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 ZCWPW2Q504Y3 356 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 CLEC6AQ6EIG7 209 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 KRTAP5-4Q6L8H1 288 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 NIPAL1Q6NVV3 410 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 XKRXQ6PP77 449 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 BRD3OSQ6XYD6 125 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 OR7G1Q8NGA0 311 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 OR5D18Q8NGL1 313 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 KCTD4Q8WVF5 259 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 C7orf50Q9BRJ6 194 aaKnown RBP2.74□□□□□ -1.97
PRKDC-208ENST00000536710 UPF3BQ9BZI7 483 aaKnown RBP2.74□□□□□ -1.97
PRKDC-208ENST00000536710 ARL6Q9H0F7 186 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 OR5V1Q9UGF6 321 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 SVILO95425 2214 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 TMEM94Q12767 1356 aa2.74□□□□□ -1.97
PRKDC-208ENST00000536710 ZBED9Q6R2W3 1325 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 B4DEV8 164 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 F5H5K5 113 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 CETN3O15182 167 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 CTLA4P16410 223 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 PSMA1P25786 263 aaKnown RBP2.73□□□□□ -1.97
PRKDC-208ENST00000536710 CRATP43155 626 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 INPP1P49441 399 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 GABARAPL2P60520 117 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 C1QTNF8P60827 252 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 FAM3AP98173 230 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 CENPWQ5EE01 88 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 ZBTB8OSQ8IWT0 167 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 KRTCAP2Q8N6L1 136 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 OTUD6BQ8N6M0 293 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 OR11G2Q8NGC1 345 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 OR9I1Q8NGQ6 314 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 DCUN1D5Q9BTE7 237 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 UGT2B28Q9BY64 529 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 CHST5Q9GZS9 411 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 MCTS1Q9ULC4 181 aaKnown RBP2.73□□□□□ -1.97
PRKDC-208ENST00000536710 ZNF443Q9Y2A4 671 aaPredicted RBP2.73□□□□□ -1.97
PRKDC-208ENST00000536710 PHLDA3Q9Y5J5 127 aa2.73□□□□□ -1.97
PRKDC-208ENST00000536710 TRBV24-1A0A075B6N3 115 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 TMEM213A2RRL7 107 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 GOLGA8RI6L899 631 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 TOX3O15405 576 aaPredicted RBP2.72□□□□□ -1.97
PRKDC-208ENST00000536710 SYNGR1O43759 233 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 P0C880 135 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 OCMP0CE72 109 aaPredicted RBP2.72□□□□□ -1.97
PRKDC-208ENST00000536710 ADORA1P30542 326 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 GABRA3P34903 492 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 GTF2BQ00403 316 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 TSPAN31Q12999 210 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 DHRS2Q13268 280 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 TAF9Q16594 264 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 TIMM23BQ5SRD1 257 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 HENMT1Q5T8I9 393 aaKnown RBP2.72□□□□□ -1.97
PRKDC-208ENST00000536710 SPNS3Q6ZMD2 512 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 MTERF4Q7Z6M4 381 aaKnown RBP2.72□□□□□ -1.97
PRKDC-208ENST00000536710 LFNGQ8NES3 379 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 ZNRF2Q8NHG8 242 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 HIST1H2BAQ96A08 127 aa2.72□□□□□ -1.97
PRKDC-208ENST00000536710 ALX4Q9H161 411 aaPredicted RBP2.72□□□□□ -1.97
PRKDC-208ENST00000536710 F5H5T6 163 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 SH2D1AO60880 128 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 PSKH1P11801 424 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 GADD45AP24522 165 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 COL8A2P25067 703 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 GRPRP30550 384 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 UBE2G2P60604 165 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 APOFQ13790 326 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 DNAL1Q4LDG9 190 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 FAM45BPQ6NSW5 357 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 WDR59Q6PJI9 974 aa2.71□□□□□ -1.98
PRKDC-208ENST00000536710 NIT1Q86X76 327 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms