RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 OR2T2Q6IF00 324 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 C20orf204Q6ZNR8 217 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 TMEM182Q6ZP80 229 aaPredicted RBP11.23□□□□□ -0.61
LDLR-203ENST00000535915 LINC00596Q86U02 117 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 MRPL30Q8TCC3 161 aaKnown RBP11.23□□□□□ -0.61
LDLR-203ENST00000535915 EDARADDQ8WWZ3 215 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 KPTNQ9Y664 436 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 MED19A0JLT2 244 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 OR5B21A6NL26 309 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 TXNL1O43396 289 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 IL18BPO95998 194 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 IGHV2-70P01814 119 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 RD3LP0DJH9 198 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 CA6P23280 308 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 RAB5CP51148 216 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 VAMP2P63027 116 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 PEA15Q15121 130 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 EIF2S3LQ2VIR3 472 aaKnown RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 CXorf66Q5JRM2 361 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 VASH2Q86V25 355 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 FAM58AQ8N1B3 248 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 COMMD1Q8N668 190 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 IL22RA1Q8N6P7 574 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 MDS2Q8NDY4 140 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 OR1K1Q8NGR3 316 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 FER1L6-AS2Q96M78 137 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 TCEAL7Q9BRU2 100 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 RIMS4Q9H426 269 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 STRAPQ9Y3F4 350 aaKnown RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 IGSF23A1L1A6 192 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 CDX4O14627 284 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 NXPH3O95157 252 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 HEXAP06865 529 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 C11orf1Q9H5F2 150 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 TRAV24A0A0B4J272 114 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 C1orf196B1AJZ1 125 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 SLC33A1O00400 549 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 CD46P15529 392 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 VDAC1P21796 283 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 UCP1P25874 307 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 HABP2Q14520 560 aaPredicted RBP11.22□□□□□ -0.61
LDLR-203ENST00000535915 ZNF266Q14584 549 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 IGFBP7Q16270 282 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 MDP1Q86V88 176 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 OR10J5Q8NHC4 309 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 IP6K3Q96PC2 410 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 PLEKHF2Q9H8W4 249 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 R4GN57 208 aa11.22□□□□□ -0.61
LDLR-203ENST00000535915 A0A1B0GV50 99 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 DUXBA0A1W2PPF3 345 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 ST8SIA5O15466 376 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 RHBDL1O75783 438 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 ZNF44P15621 663 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 IL24Q13007 206 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 HMGN3Q15651 99 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 NMSQ5H8A3 153 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 FBXW9Q5XUX1 488 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 PCSK4Q6UW60 755 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 ETV3LQ6ZN32 361 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 ZFP62Q8NB50 900 aaPredicted RBP11.21□□□□□ -0.61
LDLR-203ENST00000535915 FAM213BQ8TBF2 198 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 NANOS1Q8WY41 292 aaKnown RBP11.21□□□□□ -0.61
LDLR-203ENST00000535915 GTF3AQ92664 365 aaKnown RBP11.21□□□□□ -0.61
LDLR-203ENST00000535915 SLC25A31Q9H0C2 315 aa11.21□□□□□ -0.61
LDLR-203ENST00000535915 LYRM2Q9NU23 88 aaPredicted RBP11.21□□□□□ -0.61
LDLR-203ENST00000535915 C5orf52A6NGY3 159 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 PGLYRP1O75594 196 aaPredicted RBP11.21□□□□□ -0.62
LDLR-203ENST00000535915 S100GP29377 79 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 UCP2P55851 309 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 ATP1A1-AS1Q5TC04 95 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 HES3Q5TGS1 186 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 IL1F10Q8WWZ1 152 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 BCL2L2Q92843 193 aaPredicted RBP11.21□□□□□ -0.62
LDLR-203ENST00000535915 DLL3Q9NYJ7 618 aa11.21□□□□□ -0.62
LDLR-203ENST00000535915 H0Y980 276 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 M0R296 226 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 UBE2CO00762 179 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 PITX3O75364 302 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 AKR1C3P42330 323 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 RNF212Q495C1 297 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 PLA2G2CQ5R387 149 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 TMEM252Q8N6L7 170 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 OR5D13Q8NGL4 314 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 OR2G3Q8NGZ4 309 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 WDYHV1Q96HA8 205 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 PFDN5Q99471 154 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 OR2W1Q9Y3N9 320 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 RFNGQ9Y644 331 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 PCNX2A6NKB5 2137 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 KIAA2026Q5HYC2 2103 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 TRGV5A0A0B4J1U4 118 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 DEGS1O15121 323 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 CST7O76096 145 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 SELLP14151 372 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 HLA-DRB3P79483 266 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 FABP9Q0Z7S8 132 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 TGIF1Q15583 401 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 OR5C1Q8NGR4 320 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 ABHD14BQ96IU4 210 aa11.2□□□□□ -0.62
LDLR-203ENST00000535915 SCRT1Q9BWW7 348 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms