RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 POLR2J3Q9H1A7 115 aaKnown RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 OR51I2Q9H344 312 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TCEAL2Q9H3H9 227 aaPredicted RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 RHOJQ9H4E5 214 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 RERGLQ9H628 205 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 CYTL1Q9NRR1 136 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 EHFQ9NZC4 300 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR5V1Q9UGF6 321 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 RABAC1Q9UI14 185 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 DAPP1Q9UN19 280 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 WNT6Q9Y6F9 365 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 DSPPQ9NZW4 1301 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ATG2AQ2TAZ0 1938 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 PARP14Q460N5 1801 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 PHLPP1O60346 1717 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 TRAV9-1A0A075B6T8 112 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 TRBV5-3A0A0A0MS03 114 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 GAGE10A6NGK3 116 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ZNF705FA8MVS1 300 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 A8MZ25 164 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ANKRD66B4E2M5 251 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 DCTN6O00399 190 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 PIRO00625 290 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 HSD17B6O14756 317 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 TAX1BP3O14907 124 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 DHRS3O75911 302 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 LSM8O95777 96 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 ZNF705DP0CH99 300 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 ZNF705BP0CI00 300 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 PTHLHP12272 177 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 DRD3P35462 400 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 AVPR1AP37288 418 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ZFP36L2P47974 494 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 DLX6P56179 175 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 TAS2R46P59540 309 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 C1QTNF8P60827 252 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 RPL27P61353 136 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 GRB2P62993 217 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 PITX1P78337 314 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 TFF2Q03403 129 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 DMWDQ09019 674 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SMAGPQ0VAQ4 97 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 EXOSC7Q15024 291 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 OR1Q1Q15612 314 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SRSF7Q16629 238 aaKnown RBP eCLIP4.7□□□□□ -1.66
CD44-236ENST00000533222 CDO1Q16878 200 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 MS4A18Q3C1V0 323 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ACSF3Q4G176 576 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 ACTL10Q5JWF8 245 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 UBE2NLQ5JXB2 153 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 LY6G6FQ5SQ64 297 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SBSNQ6UWP8 590 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 C19orf35Q6ZS72 473 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 CEACAM19Q7Z692 300 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 TSEN54Q7Z6J9 526 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 SFTPA1Q8IWL2 248 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 LINC00471Q8N535 108 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 LINC01465Q8N7H1 131 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SUMF2Q8NBJ7 301 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ZNF485Q8NCK3 441 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 LRRC15Q8TF66 581 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SECTM1Q8WVN6 248 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 C8orf44Q96CB5 159 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 CXorf40BQ96DE9 158 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 ZNF75AQ96N20 296 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 PMCHL2Q9BQD1 86 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 NIPSNAP3BQ9BS92 247 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 DERL1Q9BUN8 251 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 RSPO3Q9BXY4 272 aaPredicted RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 DUSP16Q9BY84 665 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 WDR61Q9GZS3 305 aaKnown RBP4.7□□□□□ -1.66
CD44-236ENST00000533222 RPRMQ9NS64 109 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 FLRT3Q9NZU0 649 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SS18L2Q9UHA2 77 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 KCNS2Q9ULS6 477 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 HS3ST3B1Q9Y662 390 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 SBF1O95248 1867 aa4.7□□□□□ -1.66
CD44-236ENST00000533222 CACNA1SQ13698 1873 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 SAA2-SAA4A0A096LPE2 208 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 KBTBD11-OT1A0A1B0GTJ5 212 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 A0A1W2PRE2 83 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 TCRBV7S3A2A0A539 114 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 TCRBV5S1A1TA0A578 114 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ASPDHA6ND91 283 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 FRG2CA6NGY1 282 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 MANSC4A6NHS7 340 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 TMEM212A6NML5 194 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 SLC38A8A6NNN8 435 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 K7EP34 96 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 HMGB3O15347 200 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF354AO60765 605 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 HYPMO75409 117 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 CNMDO75829 334 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 VENTXO95231 258 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 WNT1P04628 370 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 CA3P07451 260 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 NGFRP08138 427 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 LINC00032P0C843 101 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 DANCRP0C864 163 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 LINC00869P0C866 280 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms