RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZFP57Q9NU63 452 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 TENM3Q9P273 2699 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 HSD17B6O14756 317 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 LIMS3P0CW19 117 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 LIMS4P0CW20 117 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 CAPGP40121 348 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 MYCNOSP40205 109 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 ETV1P50549 477 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 GTF2A1P52655 376 aaPredicted RBP8.95□□□□□ -0.98
VPS28-214ENST00000531032 SLC35B1P78383 322 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 HNF4GQ14541 408 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 RSU1Q15404 277 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 LTC4SQ16873 150 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 CCDC58Q4VC31 144 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 NHLRC3Q5JS37 347 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 OR2G6Q5TZ20 316 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 RPL22L1Q6P5R6 122 aaKnown RBP8.95□□□□□ -0.98
VPS28-214ENST00000531032 SLC35E3Q7Z769 313 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 SATL1Q86VE3 508 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 FOXRED2Q8IWF2 684 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 IZUMO1Q8IYV9 350 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 STPG2Q8N412 459 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 SUMF2Q8NBJ7 301 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 OR10K1Q8NGX5 313 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 OR10X1Q8NGY0 326 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 RGP1Q92546 391 aaPredicted RBP8.95□□□□□ -0.98
VPS28-214ENST00000531032 DPCDQ9BVM2 203 aaPredicted RBP8.95□□□□□ -0.98
VPS28-214ENST00000531032 JAM3Q9BX67 310 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 TAS2R4Q9NYW5 299 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 IL36GQ9NZH8 169 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 ZNF581Q9P0T4 197 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 LINC00527Q9UJ94 153 aa8.95□□□□□ -0.98
VPS28-214ENST00000531032 DIMT1Q9UNQ2 313 aaKnown RBP8.95□□□□□ -0.98
VPS28-214ENST00000531032 TRAV39A0A0B4J263 110 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 IGHV1-3A0A0C4DH29 117 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 EFCAB10A6NFE3 127 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 NUDT19A8MXV4 375 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 H0YHG0 523 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 MYL12BO14950 172 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 RBM11P57052 281 aaKnown RBP8.94□□□□□ -0.98
VPS28-214ENST00000531032 CD69Q07108 199 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 DCTN2Q13561 401 aaKnown RBP8.94□□□□□ -0.98
VPS28-214ENST00000531032 TGIF2LXQ8IUE1 241 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 ZNF695Q8IW36 515 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 STX19Q8N4C7 294 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 LINC00311Q8N616 119 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 Q8N6K4 173 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 C8orf31Q8N9H6 132 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 KLHL30-AS1Q8NEE0 82 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 TMEM106AQ96A25 262 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 SMIM19Q96E16 107 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 TMEM80Q96HE8 168 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 ST3GAL6Q9Y274 331 aa8.94□□□□□ -0.98
VPS28-214ENST00000531032 A0A1W2PPE3 182 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 TMEM30CPA0ZSE6 113 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 LINC01548A6NM66 108 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 C15orf65H3BRN8 121 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 AP4M1O00189 453 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 CCRL2O00421 344 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 OR7C1O76099 320 aaPredicted RBP8.93□□□□□ -0.98
VPS28-214ENST00000531032 CDRT1O95170 752 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 HTR3BO95264 441 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 GAPDHP04406 335 aaKnown RBP8.93□□□□□ -0.98
VPS28-214ENST00000531032 GZMHP20718 246 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 GPR12P47775 334 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 REG1BP48304 166 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 TAS2R43P59537 309 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 OGFRL1Q5TC84 451 aaPredicted RBP8.93□□□□□ -0.98
VPS28-214ENST00000531032 DDI2Q5TDH0 399 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 XAF1Q6GPH4 301 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 TEX38Q6PEX7 206 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 LINC00596Q86U02 117 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 TMEM104Q8NE00 496 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 OR52M1Q8NGK5 317 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 OR52N1Q8NH53 320 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 RAX2Q96IS3 184 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 EAF1Q96JC9 268 aaPredicted RBP8.93□□□□□ -0.98
VPS28-214ENST00000531032 S100A13Q99584 98 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 METTL9Q9H1A3 318 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 ABCG5Q9H222 651 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 TMEM138Q9NPI0 162 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 LIN7CQ9NUP9 197 aaKnown RBP8.93□□□□□ -0.98
VPS28-214ENST00000531032 BABAM2Q9NXR7 383 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 CKLFQ9UBR5 152 aa8.93□□□□□ -0.98
VPS28-214ENST00000531032 DNAH9Q9NYC9 4486 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 IGHV3-72A0A0B4J1Y9 119 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 PNMA8CA0A1B0GUJ8 204 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 GEMIN2O14893 280 aaKnown RBP8.92□□□□□ -0.98
VPS28-214ENST00000531032 CASQ2O14958 399 aaPredicted RBP8.92□□□□□ -0.98
VPS28-214ENST00000531032 ORC5O43913 435 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 ZNF93P35789 620 aaPredicted RBP8.92□□□□□ -0.98
VPS28-214ENST00000531032 ADARB1P78563 741 aaKnown RBP8.92□□□□□ -0.98
VPS28-214ENST00000531032 DGCR2P98153 550 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 ST3GAL4Q11206 333 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 MPV17LQ2QL34 196 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 UNQ9370/PRO34162Q6UXP9 181 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 AHSA2Q719I0 299 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 MOB3BQ86TA1 216 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 RNF152Q8N8N0 203 aa8.92□□□□□ -0.98
VPS28-214ENST00000531032 ZFP41Q8N8Y5 198 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms