RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IL36RNQ9UBH0 155 aa6.14□□□□□ -1.43
CD44-228ENST00000528455 ZNF107Q9UII5 783 aaPredicted RBP6.14□□□□□ -1.43
CD44-228ENST00000528455 V9GYH0 126 aa6.14□□□□□ -1.43
CD44-228ENST00000528455 KIAA2026Q5HYC2 2103 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 UBE2QL1A1L167 161 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 SIRPB1O00241 398 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ADAM20O43506 726 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ECDO95905 644 aaPredicted RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 NAPSAO96009 420 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 LPLP06858 475 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 CD3GP09693 182 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 GSTT2BP0CG30 244 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 DTYMKP23919 212 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 RBMXP38159 391 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 SNU13P55769 128 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 MRPS15P82914 257 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 HOXA4Q00056 320 aaPredicted RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 MEF2CQ06413 473 aaPredicted RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 ARFRP1Q13795 201 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF79Q15937 498 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 PYDC2Q56P42 97 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 PAN3Q58A45 887 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 LRRC10Q5BKY1 277 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF880Q6PDB4 577 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 LYPD2Q6UXB3 125 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF841Q6ZN19 808 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF497Q6ZNH5 498 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 Q6ZS49 121 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 GDPD3Q7L5L3 318 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF554Q86TJ5 538 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 KRTAP1-3Q8IUG1 177 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 Q8N402 240 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 BPIFB2Q8N4F0 458 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF525Q8N782 197 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNRF1Q8ND25 227 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 C19orf18Q8NEA5 215 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 OR4S1Q8NGB4 309 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 DEDD2Q8WXF8 326 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 CORO2AQ92828 525 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 NEIL1Q96FI4 390 aaPredicted RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 PERPQ96FX8 193 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 GAFA1Q96PS6 74 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 CMSS1Q9BQ75 279 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 SULT4A1Q9BR01 284 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 SPATA25Q9BR10 227 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 PIMREGQ9BSJ6 248 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 CCDC32Q9BV29 185 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 SRRQ9GZT4 340 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ETAA1Q9NY74 926 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 TAS2R8Q9NYW2 309 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 ZNF581Q9P0T4 197 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 MTFP1Q9UDX5 166 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 OPN4Q9UHM6 478 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 AK3Q9UIJ7 227 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 MGAT4AQ9UM21 535 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 YLPM1P49750 1951 aaKnown RBP6.13□□□□□ -1.43
CD44-228ENST00000528455 DSCAML1Q8TD84 2053 aa6.13□□□□□ -1.43
CD44-228ENST00000528455 KRTAP9-6A0A140TA67 174 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 TMEM30CPA0ZSE6 113 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 MEIOCA2RUB1 952 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 ISPDA4D126 451 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 NKX6-3A6NJ46 265 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 F5H0A9 414 aaPredicted RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 DVL1O14640 695 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 ORC5O43913 435 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SSX5O60225 188 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 HEXAP06865 529 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 LIPFP07098 398 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 CGB3P0DN86 165 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 CGB7P0DN87 165 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SLC25A16P16260 332 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 OR3A1P47881 315 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 CEBPDP49716 269 aaPredicted RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 GNG2P59768 71 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 LMO4P61968 165 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 AESQ08117 197 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 GRK1Q15835 563 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 CARTPTQ16568 116 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 CLEC12BQ2HXU8 276 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 KRBOX4Q5JUW0 171 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 AVPI1Q5T686 147 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 OLFML2AQ68BL7 652 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 HOGA1Q86XE5 327 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SNX29P2Q8IUI4 249 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 LYSMD2Q8IV50 215 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 IZUMO1Q8IYV9 350 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 ASCC1Q8N9N2 400 aaKnown RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 NUDT10Q8NFP7 164 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 OR52I2Q8NH67 350 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 NEK7Q8TDX7 302 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SMIM4Q8WVI0 70 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 NUDT11Q96G61 164 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 Q96MF0 132 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SDHCQ99643 169 aaPredicted RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 PPA2Q9H2U2 334 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 OR6C3Q9NZP0 311 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 SLC25A10Q9UBX3 287 aaPredicted RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 KLK11Q9UBX7 282 aa6.12□□□□□ -1.43
CD44-228ENST00000528455 LPAR3Q9UBY5 353 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms