RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KCNIP4Q6PIL6 250 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 CD200R1LQ6Q8B3 271 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 B3GLCTQ6Y288 498 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TMPRSS11AQ6ZMR5 421 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ZNF621Q6ZSS3 439 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 LINC00336Q6ZUF6 198 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 STRADAQ7RTN6 431 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SSX6Q7RTT6 188 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 H2BFWTQ7Z2G1 175 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 GLT6D1Q7Z4J2 308 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 STHQ8IWL8 128 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PDZD9Q8IXQ8 264 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 MDS2Q8NDY4 140 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 LFNGQ8NES3 379 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR7G2Q8NG99 324 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR52L1Q8NGH7 329 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR10D4PQ8NGN7 298 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 FAM45AQ8TCE6 357 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SLC7A13Q8TCU3 470 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TNFAIP8L1Q8WVP5 186 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ASB13Q8WXK3 278 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 RORBQ92753 470 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 RERGQ96A58 199 aaPredicted RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 ISOC2Q96AB3 205 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 GALMQ96C23 342 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 GPR146Q96CH1 333 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PIK3IP1Q96FE7 263 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 GALNT14Q96FL9 552 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ACCSQ96QU6 501 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR2M2Q96R28 347 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TP53RKQ96S44 253 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 APOL4Q9BPW4 351 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR2J1Q9GZK6 312 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SLIRPQ9GZT3 109 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 CDC42EP4Q9H3Q1 356 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 MFSD1Q9H3U5 465 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 FAM96AQ9H5X1 160 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SLCO1B3Q9NPD5 702 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SCN3BQ9NY72 215 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PIPOXQ9P0Z9 390 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 P2RX2Q9UBL9 471 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OPTCQ9UBM4 332 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 LGALS13Q9UHV8 139 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR10H1Q9Y4A9 318 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 V9GYS6 101 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PXDNLA1KZ92 1463 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 COL18A1P39060 1754 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 BRCA1P38398 1863 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 CASP8AP2Q9UKL3 1982 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ATG2AQ2TAZ0 1938 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ARFGEF1Q9Y6D6 1849 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 RIC1Q4ADV7 1423 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 KDM3BQ7LBC6 1761 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 A0A0J9YY10 115 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 A0A1B0GTI1 187 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SPAARA0A1B0GVQ0 90 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 A0A1B0GX78 115 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TMEM218A2RU14 115 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SMCO3A2RU48 225 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PSMB11A5LHX3 300 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TRAPPC13A5PLN9 417 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 RNF222A6NCQ9 220 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 LRIT2A6NDA9 550 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 B4DXG7 233 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TRIM49D1C9J1S8 452 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 F5H6K3 240 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PANO1I0J062 215 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PLPP3O14495 311 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SH2D1BO14796 132 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SLC31A1O15431 190 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 CHST1O43916 411 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 RDH16O75452 317 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR2J3O76001 311 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 YIF1AO95070 293 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 GABARAPO95166 117 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 MT-ND4LP03901 98 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SERPINE1P05121 402 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SERPINA7P05543 415 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 HIST1H2AGP0C0S8 130 aaPredicted RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 C8orf88P0DMB2 117 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ATP1B2P14415 290 aaPredicted RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 PVRP15151 417 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ABOP16442 354 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PMCHP20382 165 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SLC2A5P22732 501 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 MYL9P24844 172 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 RPS12P25398 132 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 PSMA1P25786 263 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 CDKN2BP42772 138 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 DNASE1L1P49184 302 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 CAV2P51636 162 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 GEMP55040 296 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR10A3P58181 314 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ZNF85Q03923 595 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 KLRC3Q07444 240 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 BAXQ07812 192 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ST3GAL4Q11206 333 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 HTR4Q13639 388 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PRSS8Q16651 343 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TMEM241Q24JQ0 296 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms