RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 WDR54Q9H977 334 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 PSENENQ9NZ42 101 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 KLHDC2Q9Y2U9 406 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 A0A1W2PPC1 479 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 LIFP15018 202 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 ERVFC1-1P60608 527 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 C16orf82Q7Z2V1 217 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 C1QL4Q86Z23 238 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 OIT3Q8WWZ8 545 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 RALGAPA2Q2PPJ7 1873 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 AQP7P3A6NL99 342 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 C21orf140B9A014 251 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 CNIH1O95406 144 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 DTYMKP23919 212 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 ARL3P36405 182 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 DYNLT3P51808 116 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 FGF8P55075 233 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-213ENST00000514442 CATSPERDQ86XM0 798 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 OR10V1Q8NGI7 309 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 SAP25Q8TEE9 199 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 PILRBQ9UKJ0 227 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 GPR132Q9UNW8 380 aa11.49□□□□□ -0.57
TCOF1-213ENST00000514442 PGA3P0DJD8 388 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ATP6V0CP27449 155 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 PYY3Q5JQD4 70 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 VAX2Q9UIW0 290 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZDBF2Q9HCK1 2354 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 SNRPCP09234 159 aaKnown RBP11.48□□□□□ -0.57
TCOF1-213ENST00000514442 DEFA4P12838 97 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 COX5AP20674 150 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 CHRNA7P36544 502 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 KIR3DL2P43630 455 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 GABRA4P48169 554 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 MPV17LQ2QL34 196 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 OR5AU1Q8NGC0 362 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 SEBOXQ9HB31 216 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF331Q9NQX6 463 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF391Q9UJN7 358 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 CHRNB4P30926 498 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 HIKESHIQ53FT3 197 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF738Q8NE65 137 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 SLC2A9Q9NRM0 540 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 MSGN1A6NI15 193 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 PPP1CCP36873 323 aaKnown RBP11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF816Q0VGE8 651 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-213ENST00000514442 SAPCD1Q5SSQ6 148 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 MISP3Q96FF7 219 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ARL2-SNX15V9GYD0 113 aa11.48□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF260Q3ZCT1 412 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 VAX1Q5SQQ9 334 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 OR2M7Q8NG81 312 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 VN1R17PQ8TDU5 208 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ATP5SQ99766 215 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ANGPTL4Q9BY76 406 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF236Q9UL36 1845 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 AHCTF1Q8WYP5 2266 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 A0A1W2PQM1 296 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 KLF4O43474 513 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 SPTBP11277 2137 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 RELQ04864 619 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-213ENST00000514442 IL24Q13007 206 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ANKRD55Q3KP44 614 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 AQP3Q92482 292 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ZNF385AQ96PM9 386 aaKnown RBP11.47□□□□□ -0.57
TCOF1-213ENST00000514442 H3BP45 60 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 BIVMQ86UB2 503 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 PIKFYVEQ9Y2I7 2098 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 A0A087WWC5 75 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 A0A1W2PR77 199 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 SOCS1O15524 211 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 CD5P06127 495 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 RAB7AP51149 207 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 HERPUD1Q15011 391 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 RFESDQ8TAC1 157 aa11.47□□□□□ -0.57
TCOF1-213ENST00000514442 ADAM20O43506 726 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 CRISP2P16562 243 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 SUCLG1P53597 346 aaKnown RBP11.46□□□□□ -0.57
TCOF1-213ENST00000514442 RND3P61587 244 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 HEPN1Q6WQI6 88 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 PARD6GQ9BYG4 376 aaPredicted RBP11.46□□□□□ -0.57
TCOF1-213ENST00000514442 LIN7CQ9NUP9 197 aaKnown RBP11.46□□□□□ -0.57
TCOF1-213ENST00000514442 DEFB108AA8MXU0 73 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 ZNHIT1O43257 154 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 VSIG8P0DPA2 414 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 PAFAH1B2P68402 229 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 PLPPR5Q32ZL2 321 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 GTF2H5Q6ZYL4 71 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 POC1AQ8NBT0 407 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 Q8WTZ3 238 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 GALMQ96C23 342 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 SCARF2Q96GP6 870 aaPredicted RBP11.46□□□□□ -0.57
TCOF1-213ENST00000514442 MRPL37Q9BZE1 423 aaKnown RBP11.46□□□□□ -0.57
TCOF1-213ENST00000514442 SSUH2Q9Y2M2 353 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 SCN5AQ14524 2016 aa11.46□□□□□ -0.57
TCOF1-213ENST00000514442 J3QRE1 110 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 PITX3O75364 302 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 UPK3AO75631 287 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 AGFG2O95081 481 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 RPS11P62280 158 aaKnown RBP eCLIP11.46□□□□□ -0.58
TCOF1-213ENST00000514442 TMEM267Q0VDI3 215 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms