RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TIAF1O95411 115 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 CLPSP04118 112 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 BCL2P10415 239 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 BMP5P22003 454 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 PMS2P11Q13670 270 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 ATP6V1FQ16864 119 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 C10orf128Q5T292 105 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 OR5A2Q8NGI9 324 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10S1Q8NGN2 331 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 OR1K1Q8NGR3 316 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 EDARADDQ8WWZ3 215 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 NEIL1Q96FI4 390 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 GINS3Q9BRX5 216 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 RSG1Q9BU20 258 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 CTDSP1Q9GZU7 261 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 Q9N2K0 584 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF319Q9P2F9 582 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 METTL1Q9UBP6 276 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 TRPM7Q96QT4 1865 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 KNTC1P50748 2209 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 DEFB108AA8MXU0 73 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 MDKP21741 143 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 RNPS1Q15287 305 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 IQCJQ1A5X6 159 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF880Q6PDB4 577 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 SELENOHQ8IZQ5 122 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 CYTL1Q9NRR1 136 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 TP53BP1Q12888 1972 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 MMP9P14780 707 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 CDC34P49427 236 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 SSPNQ14714 243 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 OR2T10Q8NGZ9 312 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 BORCS7Q96B45 105 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 TP53RKQ96S44 253 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 S1PR3Q99500 378 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 RP1P56715 2156 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 PMELP40967 661 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 THBS3P49746 956 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 CCL11P51671 97 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 UCP3P55916 312 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 FGF12P61328 243 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM78BQ5VT40 261 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 DBX2Q6ZNG2 339 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 TRIB1Q96RU8 372 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 SPSB2Q99619 263 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 PSG11Q9UQ72 335 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 TGIF2-C20orf24A0A0A6YYL0 155 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 H0Y980 276 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 AQP7O14520 342 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 FBP1P09467 338 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 KCNMB1Q16558 191 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SMIM21Q3B7S5 101 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SLC35E3Q7Z769 313 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TMEM54Q969K7 222 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 GALNT14Q96FL9 552 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 BOD1Q96IK1 185 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM103A1Q9BTL3 118 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF665Q9H7R5 613 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 DOK5Q9P104 306 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TUBD1Q9UJT1 453 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 PITPNC1Q9UKF7 332 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TCFL5Q9UL49 500 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 RPH3ALQ9UNE2 315 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 KIF26BQ2KJY2 2108 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TRBV6-7A0A0A0MS04 114 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TRBV23-1A0A0A0MS06 115 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SOX15O60248 233 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 NAT2P11245 290 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 Q3ZCU0 254 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TIGITQ495A1 244 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 NUFIP2Q7Z417 695 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ABHD14BQ96IU4 210 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TAAR9Q96RI9 348 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 GOLGB1Q14789 3259 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 IGHV1-45A0A0A0MS14 117 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 IGHV3-43A0A0B4J1X8 118 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 HSBP1L1C9JCN9 74 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 IGHV3-43DP0DP04 118 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 NPBWR2P48146 333 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 GABRA4P48169 554 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF441Q8N8Z8 693 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 MRGPRDQ8TDS7 321 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 DAZAP1Q96EP5 407 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 TXN2Q99757 166 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ZPBPQ9BS86 351 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ANAPC1Q9H1A4 1944 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 M0R1X1 148 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 CDIPTO14735 213 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 GATCO43716 136 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 IGLV3-19P01714 112 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 CDX1P47902 265 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SRSF4Q08170 494 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF718Q3SXZ3 478 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM89BQ8N5H3 189 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SIGLECL1Q8N7X8 197 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 AP1S3Q96PC3 154 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 SRXN1Q9BYN0 137 aa7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF331Q9NQX6 463 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-216ENST00000512820 FREM3P0C091 2139 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 J3QT63 122 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms