RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 RNF122Q9H9V4 155 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 UBTD1Q9HAC8 227 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 WIPI2Q9Y4P8 454 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 hCG_38984A0A1B0GV85 526 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 YIF1AO95070 293 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 HBE1P02100 147 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 GTF3C1Q12789 2109 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 OR5C1Q8NGR4 320 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 MITD1Q8WV92 249 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 GNG13Q9P2W3 67 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 OR2W1Q9Y3N9 320 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 HMGB3O15347 200 aaKnown RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 RHBDL1O75783 438 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 OR4A8P0C604 315 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 SURF2Q15527 256 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 IGFBP7Q16270 282 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 KCNMB1Q16558 191 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 LIAT1Q6ZQX7 453 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 Q96M66 194 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 RAB1BQ9H0U4 201 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 LAMP3Q9UQV4 416 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 OOEPA6NGQ2 149 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 WNT9BO14905 357 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 SNAPINO95295 136 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 GYPAP02724 150 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 UBE2KP61086 200 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 MRPS11P82912 194 aaKnown RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 FHL1Q13642 323 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 LGALSLQ3ZCW2 172 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 ACSF3Q4G176 576 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 PLAC9Q5JTB6 97 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 RPUSD3Q6P087 351 aaKnown RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 FAHD2BQ6P2I3 314 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 LINC01560Q8TB33 94 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 FAHD2AQ96GK7 314 aa12.11□□□□□ -0.47
TCOF1-207ENST00000504761 ZNF107Q9UII5 783 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-207ENST00000504761 HOXD4P09016 255 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-207ENST00000504761 COX5BP10606 129 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 MPPED2Q15777 294 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 H3F3CQ6NXT2 135 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 SPACA3Q8IXA5 215 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 DLL3Q9NYJ7 618 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 FBXL17Q9UF56 701 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 UBE2L5PA0A1B0GUS4 154 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 C5orf63A6NC05 138 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 TMEM210A6NLX4 147 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 SCO1O75880 301 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 GZMHP20718 246 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 RPL7L1Q6DKI1 246 aaKnown RBP12.1□□□□□ -0.47
TCOF1-207ENST00000504761 BCL2L2Q92843 193 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-207ENST00000504761 IGKV1-9A0A0C4DH69 117 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 NKX2-6A6NCS4 301 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 FOXF2Q12947 444 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 NSUN5P2Q63ZY6 315 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 PRSS54Q6PEW0 395 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 OR2C3Q8N628 320 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 OR52L2PQ8NGH6 319 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 LHX4Q969G2 390 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 PLXNB3Q9ULL4 1909 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 PCDH15Q96QU1 1955 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 COL4A3Q01955 1670 aa12.1□□□□□ -0.47
TCOF1-207ENST00000504761 TMEM33P57088 247 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 GABRA6Q16445 453 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 ABHD14BQ96IU4 210 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 PIGMQ9H3S5 423 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 LPAR2Q9HBW0 351 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 CISD1Q9NZ45 108 aaKnown RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 MRPS18CQ9Y3D5 142 aaKnown RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 ZCCHC14Q8WYQ9 949 aaKnown RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 GNPNAT1Q96EK6 184 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 KIAA1671Q9BY89 1806 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 CLDN14O95500 239 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 CHRNB4P30926 498 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 REG1BP48304 166 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 RPL31P62899 125 aaKnown RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 C9orf62Q8N4C0 152 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 FRZBQ92765 325 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 RAB1CQ92928 201 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 RPEQ96AT9 228 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 GAL3ST2Q9H3Q3 398 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 IL36RNQ9UBH0 155 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 MED13Q9UHV7 2174 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 VDAC1P21796 283 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 GFRA1P56159 465 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 NAAAQ02083 359 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 RTP5Q14D33 572 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 VAX1Q5SQQ9 334 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 RBMS3Q6XE24 437 aaKnown RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 SAV1Q9H4B6 383 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-207ENST00000504761 ZNF665Q9H7R5 613 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 KIAA1456Q9P272 454 aa12.09□□□□□ -0.47
TCOF1-207ENST00000504761 HTTP42858 3142 aa12.08□□□□□ -0.47
TCOF1-207ENST00000504761 CHST1O43916 411 aa12.08□□□□□ -0.48
TCOF1-207ENST00000504761 SCAF4O95104 1147 aaKnown RBP12.08□□□□□ -0.48
TCOF1-207ENST00000504761 CD37P11049 281 aa12.08□□□□□ -0.48
TCOF1-207ENST00000504761 PSG2P11465 335 aa12.08□□□□□ -0.48
TCOF1-207ENST00000504761 ERHP84090 104 aaKnown RBP12.08□□□□□ -0.48
TCOF1-207ENST00000504761 H3F3AP84243 136 aa12.08□□□□□ -0.48
TCOF1-207ENST00000504761 PSG7Q13046 419 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms