RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 VAMP5O95183 116 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 CNOT4O95628 575 aaKnown RBP8.32□□□□□ -1.08
SYNE1-230ENST00000495090 NRASP01111 189 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 FGF5P12034 268 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 ARL4DP49703 201 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 LCN2P80188 198 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 MRPS34P82930 218 aaKnown RBP8.32□□□□□ -1.08
SYNE1-230ENST00000495090 P2RY6Q15077 328 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 LRRC75BQ2VPJ9 315 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 KRTAP27-1Q3LI81 207 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 SPIN3Q5JUX0 258 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 FAM27BQ5VT28 67 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF295-AS1Q8N0V1 137 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 GAPTQ8N292 157 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 GBGT1Q8N5D6 347 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 FADS6Q8N9I5 356 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 IMMP2LQ96T52 175 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 MYOTQ9UBF9 498 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 CBY1Q9Y3M2 126 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 IGLV3-12A0A075B6K2 115 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MAP1LC3B2A6NCE7 125 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 SLC22A20A6NK97 555 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 KIAA1324LA8MWY0 1029 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 GZMHP20718 246 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 S100GP29377 79 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 RPL23P62829 140 aaKnown RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MEF2BQ02080 365 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 ADIRFQ15847 76 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 RHBDD2Q6NTF9 364 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 LCN15Q6UWW0 184 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 BTNL3Q6UXE8 466 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 ANKRD37Q7Z713 158 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF525Q8N782 197 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MAP1LC3BQ9GZQ8 125 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 RBKSQ9H477 322 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF442Q9H7R0 627 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 OR6C3Q9NZP0 311 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MMP17Q9ULZ9 603 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 TIMM9Q9Y5J7 89 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 NCOA6Q14686 2063 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 KIR2DS1A0A191URI9 304 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 SYNGR3O43761 229 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF737O75373 536 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 VENTXO95231 258 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 NAPSAO96009 420 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 CD55P08174 381 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 OR4A8P0C604 315 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 LINC00614P0C842 121 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 RAC2P15153 192 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MDKP21741 143 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 KIR2DS4P43632 304 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 IDH3GP51553 393 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 HBG1P69891 147 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 HBG2P69892 147 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 KIR2DS1Q14954 304 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 DAZAP2Q15038 168 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 PHYHD1Q5SRE7 291 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MYO7BQ6PIF6 2116 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 BRICD5Q6PL45 260 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 MRPL41Q8IXM3 137 aaKnown RBP8.31□□□□□ -1.08
SYNE1-230ENST00000495090 NAT6Q93015 286 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 RSG1Q9BU20 258 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 OR51I2Q9H344 312 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 METTL7AQ9H8H3 244 aa8.31□□□□□ -1.08
SYNE1-230ENST00000495090 IGHV3-20A0A0C4DH32 117 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 TRBV11-1A0A0K0K1C0 115 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 LRP5LA4QPB2 252 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 DLEU1O43261 78 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 HLA-HP01893 362 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 F2RP25116 425 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 OR10J1P30954 320 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 CNN1P51911 297 aaKnown RBP8.3□□□□□ -1.08
SYNE1-230ENST00000495090 CLDN15P56746 228 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 NKAIN1Q4KMZ8 207 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 TRIM61Q5EBN2 209 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 TEX38Q6PEX7 206 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 SSX7Q7RTT5 188 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 KMT5CQ86Y97 462 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF573Q86YE8 665 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 OR2T10Q8NGZ9 312 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 LMX1AQ8TE12 382 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 BADQ92934 168 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 LSM10Q969L4 123 aaKnown RBP8.3□□□□□ -1.08
SYNE1-230ENST00000495090 ATG101Q9BSB4 218 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 VSIRQ9H7M9 311 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 MANBALQ9NQG1 85 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 FKBP11Q9NYL4 201 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 SHANK1Q9Y566 2161 aa8.3□□□□□ -1.08
SYNE1-230ENST00000495090 hCG_38984A0A1B0GV85 526 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 PGLYRP1O75594 196 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 MBP02144 154 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OPN1LWP04000 364 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 CST2P09228 141 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 CD99P14209 185 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 FGF8P55075 233 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 ERVS71-1P61550 626 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF92Q03936 586 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 HERPUD1Q15011 391 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 TMEM95Q3KNT9 176 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 KCNIP4Q6PIL6 250 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms