RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 BTG1P62324 171 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 LCN6P62502 163 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 PSG9Q00887 426 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 CFHR3Q02985 330 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 SLC10A2Q12908 348 aaPredicted RBP3.5□□□□□ -1.85
BRCA1-220ENST00000492859 PEA15Q15121 130 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 ZNF726P1Q15940 193 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 CEACAM16Q2WEN9 425 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 FAM106AQ4KMX7 169 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 VAX1Q5SQQ9 334 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 APOOLQ6UXV4 268 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 ZNF788Q6ZQV5 615 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 GTF2H5Q6ZYL4 71 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 OOSP2Q86WS3 158 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 TMEM219Q86XT9 240 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 TGIF2LYQ8IUE0 185 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 EXOC3-AS1Q8N2X6 119 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 SVBPQ8N300 66 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 TMEM229BQ8NBD8 167 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 SUMF1Q8NBK3 374 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 OR10AD1Q8NGE0 317 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 OR1L1Q8NH94 360 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 C8orf46Q8TAG6 207 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 SRSF12Q8WXF0 261 aaKnown RBP3.5□□□□□ -1.85
BRCA1-220ENST00000492859 PP6455Q8WZ26 134 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 TMEM54Q969K7 222 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 TMEM125Q96AQ2 219 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 MRPS24Q96EL2 167 aaKnown RBP3.5□□□□□ -1.85
BRCA1-220ENST00000492859 PSMB7Q99436 277 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 EMC6Q9BV81 110 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 ULBP3Q9BZM4 244 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 COA1Q9GZY4 146 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 HEXA-AS1Q9H8Q6 139 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 PRTFDC1Q9NRG1 225 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 RBM22Q9NW64 420 aaKnown RBP eCLIP3.5□□□□□ -1.85
BRCA1-220ENST00000492859 ANXA10Q9UJ72 324 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 SNX11Q9Y5W9 270 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 RALGAPA1Q6GYQ0 2036 aa3.5□□□□□ -1.85
BRCA1-220ENST00000492859 MAGI3Q5TCQ9 1506 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 HFM1A2PYH4 1435 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ZMYM2Q9UBW7 1377 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 CDK5RAP2Q96SN8 1893 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 GAGE12BA1L429 117 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.49□□□□□ -1.85
BRCA1-220ENST00000492859 GSC2O15499 205 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 TRAF3IP2O43734 574 aaPredicted RBP3.49□□□□□ -1.85
BRCA1-220ENST00000492859 UPK1BO75841 260 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 LALBAP00709 142 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 WNT1P04628 370 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 SCTP09683 121 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 CPMP14384 443 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ZNF19P17023 458 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 RAB5AP20339 215 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 AKR1C2P52895 323 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 HOXC5Q00444 222 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 DEFA5Q01523 94 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 SLC25A11Q02978 314 aaKnown RBP3.49□□□□□ -1.85
BRCA1-220ENST00000492859 NRF1Q16656 503 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 MSMPQ1L6U9 139 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 RASL11AQ6T310 242 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 HRCT1Q6UXD1 115 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 LCNL1Q6ZST4 164 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 CDC20BQ86Y33 519 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 SPACA3Q8IXA5 215 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ZCCHC24Q8N2G6 241 aaKnown RBP3.49□□□□□ -1.85
BRCA1-220ENST00000492859 KRTCAP2Q8N6L1 136 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 LINC01465Q8N7H1 131 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.49□□□□□ -1.85
BRCA1-220ENST00000492859 PLPP5Q8NEB5 264 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 OR5AP2Q8NGF4 316 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 OR8D4Q8NGM9 314 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 PLEKHB2Q96CS7 222 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 ACY3Q96HD9 319 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 BMFQ96LC9 184 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 TSPAN32Q96QS1 320 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 TM2D1Q9BX74 207 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 PRSS22Q9GZN4 317 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 SLAMF8Q9P0V8 285 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 PLA2G2DQ9UNK4 145 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 LOXHD1Q8IVV2 1947 aa3.49□□□□□ -1.85
BRCA1-220ENST00000492859 TMEM131Q92545 1883 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 NSD3Q9BZ95 1437 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 ROBO3Q96MS0 1386 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 CUL7Q14999 1698 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 CROCCQ5TZA2 2017 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 MED19A0JLT2 244 aaPredicted RBP3.48□□□□□ -1.85
BRCA1-220ENST00000492859 NCBP2LA6PVI3 153 aaKnown RBP3.48□□□□□ -1.85
BRCA1-220ENST00000492859 PRR32B1ATL7 298 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 K7ENP7 123 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 IGKV1D-16P01601 117 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 MT-ND4LP03901 98 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 FGF1P05230 155 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 CTSDP07339 412 aaPredicted RBP3.48□□□□□ -1.85
BRCA1-220ENST00000492859 LGALS1P09382 135 aaKnown RBP3.48□□□□□ -1.85
BRCA1-220ENST00000492859 AKAIN1P0CW23 69 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 CT45A10P0DMU9 189 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 LIFP15018 202 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 ELK3P41970 407 aa3.48□□□□□ -1.85
BRCA1-220ENST00000492859 RPL29P47914 159 aaKnown RBP3.48□□□□□ -1.85
BRCA1-220ENST00000492859 SUB1P53999 127 aaKnown RBP eCLIP3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms