RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 HLA-DRB3P79483 266 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 MZT1Q08AG7 82 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 FOXF2Q12947 444 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 ZNF154Q13106 437 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 MSMO1Q15800 293 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 BHLHA15Q7RTS1 189 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 C11orf53Q8IXP5 236 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 FAM71E2Q8N5Q1 922 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 RBMXL3Q8N7X1 1067 aaKnown RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 CNEP1R1Q8N9A8 125 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 BHLHE23Q8NDY6 225 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 BVESQ8NE79 360 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 MRPL24Q96A35 216 aaKnown RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 ADAT1Q9BUB4 502 aaKnown RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 ZNF471Q9BX82 626 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 ARV1Q9H2C2 271 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 CXXC4Q9H2H0 198 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 C11orf1Q9H5F2 150 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 IL36RNQ9UBH0 155 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 FBXO9Q9UK97 447 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 SLC25A15Q9Y619 301 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 SPTBN1Q01082 2364 aaKnown RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 NOTCH2Q04721 2471 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 IGHV2OR16-5A0A0B4J2B6 119 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 C3orf85A0A1B0GTC6 90 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 E5RGE8 158 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 IFNL4K9M1U5 179 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 SLC33A1O00400 549 aaPredicted RBP9.09□□□□□ -0.95
USP4-214ENST00000491791 SH2D1BO14796 132 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 RHBDL1O75783 438 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 SCTP09683 121 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 CECR9P0C854 216 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 MMP9P14780 707 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 PDCD1Q15116 288 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 ZNF718Q3SXZ3 478 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 TIMM23BQ5SRD1 257 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 C1orf185Q5T7R7 199 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 FIP1L1Q6UN15 594 aaKnown RBP9.09□□□□□ -0.95
USP4-214ENST00000491791 C20orf204Q6ZNR8 217 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 CXorf67Q86X51 503 aaPredicted RBP9.09□□□□□ -0.95
USP4-214ENST00000491791 STPG2Q8N412 459 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 ZNF610Q8N9Z0 462 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 OR5D13Q8NGL4 314 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 OR4D5Q8NGN0 318 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 TOMM40LQ969M1 308 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 AKR1E2Q96JD6 320 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 USB1Q9BQ65 265 aaKnown RBP9.09□□□□□ -0.95
USP4-214ENST00000491791 SFXN3Q9BWM7 321 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 PRR13Q9NZ81 148 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 NUP50Q9UKX7 468 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 NSG2Q9Y328 171 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 OR2W1Q9Y3N9 320 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 RELNP78509 3460 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 TEX15Q9BXT5 2789 aa9.09□□□□□ -0.95
USP4-214ENST00000491791 IGHV1-18A0A0C4DH31 117 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 RAB19A4D1S5 217 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 MSGN1A6NI15 193 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 H0Y980 276 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 I3L521 148 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 MLNRO43193 412 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 ZNHIT1O43257 154 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 MBPP02686 304 aaPredicted RBP9.08□□□□□ -0.96
USP4-214ENST00000491791 FAM157CP0CG43 387 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 ZNF250P15622 560 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 MPV17P39210 176 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 CD200P41217 278 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 P2RY1P47900 373 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 FXYD4P59646 89 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SMCO1Q147U7 214 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 ATXN7L3Q14CW9 347 aaPredicted RBP9.08□□□□□ -0.96
USP4-214ENST00000491791 OR8G1Q15617 311 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 HMGN3Q15651 99 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 TSC22D1Q15714 1073 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 ALKBH6Q3KRA9 238 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 C4orf17Q53FE4 359 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SPATA46Q5T0L3 261 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SLC35E4Q6ICL7 350 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 EIF5AL1Q6IS14 154 aaKnown RBP9.08□□□□□ -0.96
USP4-214ENST00000491791 UQCC3Q6UW78 93 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SSX8Q7RTT4 187 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 LYZL2Q7Z4W2 148 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 FAM90A1Q86YD7 464 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 LURAP1LQ8IV03 231 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 CMTM1Q8IZ96 169 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SELENOHQ8IZQ5 122 aaKnown RBP9.08□□□□□ -0.96
USP4-214ENST00000491791 ZNF565Q8N9K5 539 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 NAXEQ8NCW5 288 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 OR10Z1Q8NGY1 313 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 LHFPL5Q8TAF8 219 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 FAM216AQ8WUB2 273 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 RNF141Q8WVD5 230 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SAT2Q96F10 170 aaPredicted RBP9.08□□□□□ -0.96
USP4-214ENST00000491791 KIRREL1Q96J84 757 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 CXorf58Q96LI9 332 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 ZNF488Q96MN9 340 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SPIN2AQ99865 258 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 SPIN2BQ9BPZ2 258 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 PIGMQ9H3S5 423 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 TP53TG5Q9Y2B4 290 aa9.08□□□□□ -0.96
USP4-214ENST00000491791 FAM215AQ9Y5M1 114 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms