RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 LSM5Q9Y4Y9 91 aaKnown RBP4.99□□□□□ -1.61
VPS41-214ENST00000490924 TIMM9Q9Y5J7 89 aa4.99□□□□□ -1.61
VPS41-214ENST00000490924 TDRD6O60522 2096 aaKnown RBP4.99□□□□□ -1.61
VPS41-214ENST00000490924 LY6G6EA0A0G2JKS1 128 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OR5B21A6NL26 309 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 PATE3B3GLJ2 98 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 B4E171 279 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 TMEM250H0YL14 139 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 HSD17B6O14756 317 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 TNFSF11O14788 317 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 GEMIN2O14893 280 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 SIGLEC5O15389 551 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 PHF1O43189 567 aaPredicted RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 PPIHO43447 177 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 KCNAB3O43448 404 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 NME2P1O60361 137 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 RAMP1O60894 148 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OR2C1O95371 312 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 IFNA1P01562 189 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OPN1MWP04001 364 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 LCATP04180 440 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 KLK3P07288 261 aaPredicted RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 SNRNP70P08621 437 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 SRP19P09132 144 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 MMP7P09237 267 aaPredicted RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 OPN1MW2P0DN77 364 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OPN1MW3P0DN78 364 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 AADACP22760 399 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 ATP6V0CP27449 155 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 TSPAN7P41732 249 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 DUSP3P51452 185 aaPredicted RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 B3GALT5-AS1P59052 145 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 POLR2GP62487 172 aaKnown RBP eCLIP4.98□□□□□ -1.61
VPS41-214ENST00000490924 RPL23AP62750 156 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 VAMP2P63027 116 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 HBG1P69891 147 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 HBG2P69892 147 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SIGLEC14Q08ET2 396 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CR1LQ2VPA4 569 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SNAI3Q3KNW1 292 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CEACAM21Q3KPI0 293 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 COA6Q5JTJ3 125 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 AKR1C8PQ5T2L2 129 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 RAET1LQ5VY80 246 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CARD17Q5XLA6 110 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 RTN4RL2Q86UN3 420 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 TGIF2LYQ8IUE0 185 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 ZNF695Q8IW36 515 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 Q8IYB0 196 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SELENOHQ8IZQ5 122 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 BOLLQ8N9W6 283 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 ZBTB34Q8NCN2 500 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OR5A2Q8NGI9 324 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OR5D18Q8NGL1 313 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 OR2V1Q8NHB1 315 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CLDND2Q8NHS1 167 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 FAM213BQ8TBF2 198 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SAP25Q8TEE9 199 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 RLN3Q8WXF3 142 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SLAMF9Q96A28 289 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 SIGLEC12Q96PQ1 595 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 FOXB1Q99853 325 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 RBM24Q9BX46 236 aaKnown RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 TPSD1Q9BZJ3 242 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 STRADBQ9C0K7 418 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 TOLLIPQ9H0E2 274 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 WNT5BQ9H1J7 359 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CHODLQ9H9P2 273 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 PROK2Q9HC23 129 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 GPR173Q9NS66 373 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 CA14Q9ULX7 337 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 UBE2J1Q9Y385 318 aaPredicted RBP4.98□□□□□ -1.61
VPS41-214ENST00000490924 MPC1Q9Y5U8 109 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 U3KQA8 63 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 X6R8D5 127 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 FER1L5A0AVI2 2057 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 ATG2BQ96BY7 2078 aa4.98□□□□□ -1.61
VPS41-214ENST00000490924 KNL1Q8NG31 2342 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 C5orf42Q9H799 3197 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 CFAP54Q96N23 3096 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 IGKV1-12A0A0C4DH73 117 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 A0A0J9YW62 118 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 LOC102723971A0A1B0GUV8 181 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 A0A1W2PPH5 198 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 A0A1W2PQM1 296 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 OR5H15A6NDH6 313 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PCP4L1A6NKN8 68 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 A6NLC8 198 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 RNF212BA8MTL3 300 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF724A8MTY0 619 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF587BE7ETH6 402 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PROB1E7EW31 1015 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 H0YL77 283 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 H3BQ15 152 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 CLDN34H7C241 214 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 NTN3O00634 580 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 AGPAT2O15120 278 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 KLF7O75840 302 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 CYB5R3P00387 301 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms