RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TMEM200BQ69YZ2 307 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 BTNL3Q6UXE8 466 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 KIR3DL3Q8N743 410 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 GDPD1Q8N9F7 314 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 DACT3Q96B18 629 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF714Q96N38 554 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF286AQ9HBT8 521 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 Q9N2K0 584 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 IFT46Q9NQC8 304 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ELF5Q9UKW6 265 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-221ENST00000489562 MAP1AP78559 2803 aaPredicted RBP11.46□□□□□ -0.58
C9orf3-221ENST00000489562 ABCA1O95477 2261 aa11.46□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF728P0DKX0 622 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 CGB3P0DN86 165 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 CGB7P0DN87 165 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 PAX2Q02962 417 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 LSAMPQ13449 338 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF273Q14593 569 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 HMGN3Q15651 99 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF79Q15937 498 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 TCF23Q7RTU1 214 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 GLCCI1Q86VQ1 547 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 HOGA1Q86XE5 327 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 MFSD4AQ8N468 514 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 OR13A1Q8NGR1 328 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 SETD6Q8TBK2 473 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 MRGPRDQ8TDS7 321 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 CCDC107Q8WV48 283 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 CYYR1Q96J86 154 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 COX4I2Q96KJ9 171 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 SRRQ9GZT4 340 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 LINC00574Q9H8X3 128 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 ANAPC10Q9UM13 185 aa11.45□□□□□ -0.58
C9orf3-221ENST00000489562 FLNAP21333 2647 aaKnown RBP11.44□□□□□ -0.58
C9orf3-221ENST00000489562 KBTBD11-OT1A0A1B0GTJ5 212 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 MEIOCA2RUB1 952 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 TRDCB7Z8K6 153 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 M0R1W7 72 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 SPINT2O43291 252 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 RBBP9O75884 186 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 DIRAS3O95661 229 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 IGHV4-31P0DP07 118 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 RCC1P18754 421 aaPredicted RBP11.44□□□□□ -0.58
C9orf3-221ENST00000489562 CD40LGP29965 261 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 RCVRNP35243 200 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 DVL1P1P54792 670 aaPredicted RBP11.44□□□□□ -0.58
C9orf3-221ENST00000489562 HLA-DRB3P79483 266 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 GUCA2AQ02747 115 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF846Q147U1 533 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 CYB5R2Q6BCY4 276 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 C1orf122Q6ZSJ8 110 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 Q8N402 240 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 OR10A7Q8NGE5 316 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 OR52I2Q8NH67 350 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 GCDHQ92947 438 aaPredicted RBP11.44□□□□□ -0.58
C9orf3-221ENST00000489562 TMEM186Q96B77 213 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 ST6GALNAC5Q9BVH7 336 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 TAF9BQ9HBM6 251 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 LPAR2Q9HBW0 351 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 TAS2R8Q9NYW2 309 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 CALYQ9NYX4 217 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 MTFP1Q9UDX5 166 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF107Q9UII5 783 aaPredicted RBP11.44□□□□□ -0.58
C9orf3-221ENST00000489562 INSIG2Q9Y5U4 225 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 KPTNQ9Y664 436 aa11.44□□□□□ -0.58
C9orf3-221ENST00000489562 C17orf98A8MV24 154 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 C12orf77C9JDV5 145 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 INHBBP09529 407 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 NAT1P18440 290 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 DLX6P56179 175 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 DGCR2P98153 550 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 DCAF12L2Q5VW00 463 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 HEPN1Q6WQI6 88 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 Q6ZPA2 131 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 MAPK1IP1LQ8NDC0 245 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 BEST4Q8NFU0 473 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 OR4A4PQ8NGN8 299 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 ARL11Q969Q4 196 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 MSI2Q96DH6 328 aaKnown RBP11.43□□□□□ -0.58
C9orf3-221ENST00000489562 TSC22D3Q99576 134 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 CCDC32Q9BV29 185 aa11.43□□□□□ -0.58
C9orf3-221ENST00000489562 ZNF230Q9UIE0 474 aaPredicted RBP11.43□□□□□ -0.58
C9orf3-221ENST00000489562 RBMX2Q9Y388 322 aaKnown RBP11.43□□□□□ -0.58
C9orf3-221ENST00000489562 TRAV39A0A0B4J263 110 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 MEIS3P1A6NDR6 274 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 NPIPB11E5RHQ5 1161 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 C15orf65H3BRN8 121 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 J3QLI3 93 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 SMAD7O15105 426 aaKnown RBP11.42□□□□□ -0.58
C9orf3-221ENST00000489562 FABP7O15540 132 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 TGFAP01135 160 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 CSF1P09603 554 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 CTXN2P0C2S0 81 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 GSTT2BP0CG30 244 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 CCL3L1P16619 93 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 SSTR5P35346 364 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 PPP5CP53041 499 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 TAS2R46P59540 309 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 C17orf58Q2M2W7 97 aa11.42□□□□□ -0.58
C9orf3-221ENST00000489562 ACTBL2Q562R1 376 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms