RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 DCLRE1BQ9H816 532 aa9.74□□□□□ -0.85
CPSF3-204ENST00000489403 LIN7CQ9NUP9 197 aaKnown RBP9.74□□□□□ -0.85
CPSF3-204ENST00000489403 FAM118AQ9NWS6 357 aa9.74□□□□□ -0.85
CPSF3-204ENST00000489403 ST3GAL6Q9Y274 331 aa9.74□□□□□ -0.85
CPSF3-204ENST00000489403 NCBP2LA6PVI3 153 aaKnown RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 C15orf65H3BRN8 121 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 RAMP3O60896 148 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 ATP5HO75947 161 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 OR7C1O76099 320 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 CDRT1O95170 752 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 FADS2O95864 444 aaKnown RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 GAPDHP04406 335 aaKnown RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 LUMP51884 338 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 GTF2A1P52655 376 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 GBX2P52951 348 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 RBM11P57052 281 aaKnown RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 DEFB136Q30KP8 78 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 NHLRC3Q5JS37 347 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 LCNL1Q6ZST4 164 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 LINC00311Q8N616 119 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 TMEM104Q8NE00 496 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 UBALD1Q8TB05 177 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 IFT22Q9H7X7 185 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 AMBNQ9NP70 447 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 FAM53CQ9NYF3 392 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 IL36GQ9NZH8 169 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 ZMAT5Q9UDW3 170 aaKnown RBP9.73□□□□□ -0.85
CPSF3-204ENST00000489403 GMPPBQ9Y5P6 360 aa9.73□□□□□ -0.85
CPSF3-204ENST00000489403 IGHV3-43A0A0B4J1X8 118 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 TMEM30CPA0ZSE6 113 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 H3BNX3 289 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 SDCBPO00560 298 aaPredicted RBP9.72□□□□□ -0.85
CPSF3-204ENST00000489403 GEMIN2O14893 280 aaKnown RBP9.72□□□□□ -0.85
CPSF3-204ENST00000489403 MPZL2O60487 215 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 CIB2O75838 187 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 IGHV3-43DP0DP04 118 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 GZMHP20718 246 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 RAB40BQ12829 278 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 PNLIPRP3Q17RR3 467 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 OR52M1Q8NGK5 317 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 OR52I1Q8NGK6 324 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 OR2T10Q8NGZ9 312 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 OR8U1Q8NH10 309 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 OR52N1Q8NH53 320 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 RTN4IP1Q8WWV3 396 aaPredicted RBP9.72□□□□□ -0.85
CPSF3-204ENST00000489403 ARL11Q969Q4 196 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 ST6GALNAC6Q969X2 333 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 RBMXL1Q96E39 390 aaKnown RBP9.72□□□□□ -0.85
CPSF3-204ENST00000489403 HSPB9Q9BQS6 159 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 METTL9Q9H1A3 318 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 PLSCR3Q9NRY6 295 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 GFOD1Q9NXC2 390 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 ING4Q9UNL4 249 aa9.72□□□□□ -0.85
CPSF3-204ENST00000489403 LSM4Q9Y4Z0 139 aaKnown RBP9.72□□□□□ -0.85
CPSF3-204ENST00000489403 A0A1W2PP11 408 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF736B4DX44 427 aaPredicted RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 SLC31A2O15432 143 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 MOSP00540 346 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CSTBP04080 98 aaKnown RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 NHLRC4P0CG21 123 aaPredicted RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 SERPINA2P20848 420 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CD1BP29016 333 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CDX1P47902 265 aaPredicted RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 GP2P55259 537 aaKnown RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CFHR3Q02985 330 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 FOXE3Q13461 319 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 GPR50Q13585 617 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 KIR2DS1Q14954 304 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 KLHL22Q53GT1 634 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CXorf66Q5JRM2 361 aaPredicted RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 NKAPLQ5M9Q1 402 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 C9orf66Q5T8R8 295 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 DDI2Q5TDH0 399 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 XAF1Q6GPH4 301 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 LINC00596Q86U02 117 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CBR4Q8N4T8 237 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 RNF152Q8N8N0 203 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 C8orf31Q8N9H6 132 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 OR5M8Q8NGP6 311 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 RHOXF1Q8NHV9 184 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 GPR148Q8TDV2 347 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 CCDC107Q8WV48 283 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 TMEM106AQ96A25 262 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 PRR25Q96S07 402 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 GON7Q9BXV9 100 aa9.71□□□□□ -0.86
CPSF3-204ENST00000489403 MRPS18AQ9NVS2 196 aaKnown RBP9.71□□□□□ -0.86
CPSF3-204ENST00000489403 ORC5O43913 435 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 CD2P06729 351 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 ELANEP08246 267 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 LIMS3P0CW19 117 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 LIMS4P0CW20 117 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 IL3RAP26951 378 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF93P35789 620 aaPredicted RBP9.7□□□□□ -0.86
CPSF3-204ENST00000489403 MPV17LQ2QL34 196 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 ATAD3CQ5T2N8 411 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF497Q6ZNH5 498 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 FAM71E2Q8N5Q1 922 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 APH1BQ8WW43 257 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 ORAI1Q96D31 301 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 Q96MT0 163 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms