RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 CALYQ9NYX4 217 aa12.89□□□□□ -0.35
C9orf3-219ENST00000488186 ZNF69Q9UC07 566 aa12.89□□□□□ -0.35
C9orf3-219ENST00000488186 SPATA2Q9UM82 520 aa12.89□□□□□ -0.35
C9orf3-219ENST00000488186 SESN1Q9Y6P5 492 aa12.89□□□□□ -0.35
C9orf3-219ENST00000488186 SPINT2O43291 252 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 FSHBP01225 129 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 CD3GP09693 182 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 OMGP23515 440 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 NFYBP25208 207 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 TMEM50BP56557 158 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 DYNC1I2Q13409 638 aaKnown RBP12.88□□□□□ -0.35
C9orf3-219ENST00000488186 LTC4SQ16873 150 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 PRAMEF5Q5TYX0 476 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 MZT2AQ6P582 158 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 TRAT1Q6PIZ9 186 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 HEPN1Q6WQI6 88 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 TCF23Q7RTU1 214 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 PNKDQ8N490 385 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 OR5H6Q8NGV6 325 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 RFESDQ8TAC1 157 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 ZNF418Q8TF45 676 aaPredicted RBP12.88□□□□□ -0.35
C9orf3-219ENST00000488186 ACOT12Q8WYK0 555 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 AP3S1Q92572 193 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 ARL11Q969Q4 196 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 KCTD12Q96CX2 325 aaKnown RBP12.88□□□□□ -0.35
C9orf3-219ENST00000488186 CMSS1Q9BQ75 279 aaKnown RBP12.88□□□□□ -0.35
C9orf3-219ENST00000488186 SUCNR1Q9BXA5 334 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 DIABLOQ9NR28 239 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 IDI2-AS1Q9NZ38 188 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 FAM96BQ9Y3D0 163 aa12.88□□□□□ -0.35
C9orf3-219ENST00000488186 RNASEK-C17orf49H0YIS7 233 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 TOR1AO14656 332 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 GNB3P16520 340 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 TALDO1P37837 337 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 ARFRP1Q13795 201 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 RUSC1-AS1Q66K80 236 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 PRR18Q8N4B5 295 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 C11orf42Q8N5U0 333 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 ZDHHC16Q969W1 377 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 S100A16Q96FQ6 103 aaKnown RBP12.87□□□□□ -0.35
C9orf3-219ENST00000488186 TMEM133Q9H2Q1 129 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 COMMD3Q9UBI1 195 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 AK3Q9UIJ7 227 aa12.87□□□□□ -0.35
C9orf3-219ENST00000488186 MEIOCA2RUB1 952 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 NPFFO15130 113 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ORC5O43913 435 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ARG1P05089 322 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ZNF182P17025 639 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-219ENST00000488186 SSTR5P35346 364 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 SPCS2Q15005 226 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 C17orf58Q2M2W7 97 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 CDNFQ49AH0 187 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 PLAC9Q5JTB6 97 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ABHD12Q8N2K0 398 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 SAMD12Q8N8I0 201 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 MRPL30Q8TCC3 161 aaKnown RBP12.86□□□□□ -0.35
C9orf3-219ENST00000488186 TNFRSF14Q92956 283 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ISOC1Q96CN7 298 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 SLC6A7Q99884 636 aa12.86□□□□□ -0.35
C9orf3-219ENST00000488186 ZMAT3Q9HA38 289 aaKnown RBP12.86□□□□□ -0.35
C9orf3-219ENST00000488186 KIAA2026Q5HYC2 2103 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 FOXI3A8MTJ6 420 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-219ENST00000488186 SERPINE3A8MV23 424 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 RAB27BO00194 218 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 MMP23AO75900 390 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 CGB3P0DN86 165 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 CGB7P0DN87 165 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 HIST1H1DP16402 221 aaKnown RBP12.85□□□□□ -0.35
C9orf3-219ENST00000488186 RCC1P18754 421 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-219ENST00000488186 PRRX1P54821 245 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 UBE2NLQ5JXB2 153 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 RTN4RL2Q86UN3 420 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 BCL6BQ8N143 479 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-219ENST00000488186 OR10A7Q8NGE5 316 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 CLEC7AQ9BXN2 247 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 TAF9BQ9HBM6 251 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 C12orf4Q9NQ89 552 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 MGAT4AQ9UM21 535 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 CEPT1Q9Y6K0 416 aa12.85□□□□□ -0.35
C9orf3-219ENST00000488186 TRAV18A0A075B6X5 111 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 A0A0A6YYH2 397 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 A0A0A6YYJ9 748 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 IGHV2-26A0A0B4J1V2 119 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 SMIM31A0A1B0GVY4 71 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 FAM172BPA6NC97 362 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 A6NJ64 397 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 SDCBPO00560 298 aaPredicted RBP12.84□□□□□ -0.35
C9orf3-219ENST00000488186 TUSC1Q2TAM9 212 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 MIDNQ504T8 468 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 C9orf139Q6ZV77 190 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 MOB1BQ7L9L4 216 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 PRIMA1Q86XR5 153 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 GAPTQ8N292 157 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 UBALD1Q8TB05 177 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 ZNF596Q8TC21 504 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 KIRREL1Q96J84 757 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 JMJD8Q96S16 334 aa12.84□□□□□ -0.35
C9orf3-219ENST00000488186 CUBNO60494 3623 aa12.83□□□□□ -0.36
C9orf3-219ENST00000488186 FAM25AB3EWG3 89 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms