RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SLC35A2P78381 396 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 RIPK1Q13546 671 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 LRRC36Q1X8D7 754 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 SLC22A6Q4U2R8 563 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 NHLRC3Q5JS37 347 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 OR8H3Q8N146 312 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 CYGBQ8WWM9 190 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 GHSRQ92847 366 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 BABAM2Q9NXR7 383 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 DIMT1Q9UNQ2 313 aaKnown RBP17.08■□□□□ 0.32
USP40-215ENST00000484528 IGHV3-43A0A0B4J1X8 118 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 HSD17B6O14756 317 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 IGHV3-43DP0DP04 118 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 OR10A7Q8NGE5 316 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 ARL11Q969Q4 196 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 RDH12Q96NR8 316 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 IFT22Q9H7X7 185 aa17.07■□□□□ 0.32
USP40-215ENST00000484528 EXOSC1Q9Y3B2 195 aaKnown RBP17.07■□□□□ 0.32
USP40-215ENST00000484528 TRAV8-7A0A075B6U6 113 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 TRBV5-5A0A0J9YX44 114 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 IRGMA1A4Y4 181 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 SERPINE3A8MV23 424 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 SDCBPO00560 298 aaPredicted RBP17.06■□□□□ 0.32
USP40-215ENST00000484528 IGFBP3P17936 291 aaPredicted RBP17.06■□□□□ 0.32
USP40-215ENST00000484528 C18orf65Q6ZTR6 163 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 MOB3BQ86TA1 216 aa17.06■□□□□ 0.32
USP40-215ENST00000484528 IGHV1-3A0A0C4DH29 117 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 PNMA8CA0A1B0GUJ8 204 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 A0A1W2PPK0 400 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 C15orf65H3BRN8 121 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 CCRL2O00421 344 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 EBAG9O00559 213 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 MPV17LQ2QL34 196 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 DMKNQ6E0U4 476 aaPredicted RBP17.05■□□□□ 0.32
USP40-215ENST00000484528 ETV3LQ6ZN32 361 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 SLC16A12Q6ZSM3 486 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 MUL1Q969V5 352 aa17.05■□□□□ 0.32
USP40-215ENST00000484528 RCC1LQ96I51 464 aaKnown RBP17.05■□□□□ 0.32
USP40-215ENST00000484528 PAK1IP1Q9NWT1 392 aaPredicted RBP17.05■□□□□ 0.32
USP40-215ENST00000484528 FGF16O43320 207 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 GZMHP20718 246 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 HOXD3P31249 432 aaPredicted RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 RPS11P62280 158 aaKnown RBP eCLIP17.04■□□□□ 0.32
USP40-215ENST00000484528 RPL23AP62750 156 aaKnown RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 ZNF816Q0VGE8 651 aaPredicted RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 Q499Y3 187 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 SLC35E3Q7Z769 313 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 LINC00596Q86U02 117 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 JAGN1Q8N5M9 183 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 LINC00482Q8N8I6 264 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 RBMXL1Q96E39 390 aaKnown RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 TMEM80Q96HE8 168 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 PGLYRP3Q96LB9 341 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 OR14A2Q96R54 314 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 CHCHD3Q9NX63 227 aaKnown RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 CKLFQ9UBR5 152 aa17.04■□□□□ 0.32
USP40-215ENST00000484528 MRPS28Q9Y2Q9 187 aaKnown RBP17.04■□□□□ 0.32
USP40-215ENST00000484528 NUDT19A8MXV4 375 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 K7EIL1 84 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 AIPO00170 330 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 GAPDHP04406 335 aaKnown RBP17.03■□□□□ 0.32
USP40-215ENST00000484528 GTF2F2P13984 249 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 KRTAP10-11P60412 298 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 ZNF497Q6ZNH5 498 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 CHPT1Q8WUD6 406 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 CYYR1Q96J86 154 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 EAF1Q96JC9 268 aaPredicted RBP17.03■□□□□ 0.32
USP40-215ENST00000484528 GFOD1Q9NXC2 390 aa17.03■□□□□ 0.32
USP40-215ENST00000484528 LINC01548A6NM66 108 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 NCBP2LA6PVI3 153 aaKnown RBP17.02■□□□□ 0.32
USP40-215ENST00000484528 SLC31A2O15432 143 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 ZNF780AO75290 641 aaPredicted RBP17.02■□□□□ 0.32
USP40-215ENST00000484528 MT-ND4P03905 459 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 YIF1BQ5BJH7 314 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 GLIPR1L1Q6UWM5 242 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 C8orf86Q6ZUL3 223 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 OR2W3Q7Z3T1 314 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 MRPL41Q8IXM3 137 aaKnown RBP17.02■□□□□ 0.32
USP40-215ENST00000484528 ZNF485Q8NCK3 441 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 SETD9Q8NE22 299 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 OR52M1Q8NGK5 317 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 GGHQ92820 318 aa17.02■□□□□ 0.32
USP40-215ENST00000484528 C12orf77C9JDV5 145 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 IGHG2P01859 326 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 MAS1P04201 325 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 FSTP19883 344 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 ST3GAL4Q11206 333 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 MED21Q13503 144 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 TTC23Q5W5X9 447 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 AWAT2Q6E213 333 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 IZUMO1Q8IYV9 350 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 PRR18Q8N4B5 295 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 STX19Q8N4C7 294 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 KLHL30-AS1Q8NEE0 82 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 OR51D1Q8NGF3 324 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 OR10V1Q8NGI7 309 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 OR4K15Q8NH41 348 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 BANF2Q9H503 90 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 ETAA1Q9NY74 926 aa17.01■□□□□ 0.31
USP40-215ENST00000484528 RCC2Q9P258 522 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms