RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 A0A1W2PRM7 423 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 TMEM89A2RUT3 159 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 NOTOA8MTQ0 251 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 VGLL3A8MV65 326 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 C15orf65H3BRN8 121 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 ORC5O43913 435 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 IGLV1-47P01700 117 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 ARG1P05089 322 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 GADD45AP24522 165 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 GDNFP39905 211 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 COMPP49747 757 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-208ENST00000484246 LGALS4P56470 323 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 TRAT1Q6PIZ9 186 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 SLC16A12Q6ZSM3 486 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 OR51D1Q8NGF3 324 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 OR5R1Q8NH85 324 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 ZNF596Q8TC21 504 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 MRGPRDQ8TDS7 321 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 NEK7Q8TDX7 302 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 MBNL3Q9NUK0 354 aaKnown RBP12.89□□□□□ -0.35
UPF3A-208ENST00000484246 ING3Q9NXR8 418 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 IDI2-AS1Q9NZ38 188 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 COL6A5A8TX70 2615 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 IGHV4-59P01825 116 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 SMIM18P0DKX4 95 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 SSTR5P35346 364 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 CLDN12P56749 244 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 FAM189A2Q15884 450 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 C2orf76Q3KRA6 126 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 LDLRAD2Q5SZI1 272 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 C6orf183Q5T699 404 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 C16orf87Q6PH81 154 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 BRICD5Q6PL45 260 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 ABHD12Q8N2K0 398 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 OR52M1Q8NGK5 317 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 OR4P4Q8NGL7 312 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 C17orf50Q8WW18 174 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 DYRK2Q92630 601 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 PTX4Q96A99 478 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 YIPF6Q96EC8 236 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 MALSU1Q96EH3 234 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 DUX5Q96PT3 197 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 NEDD4LQ96PU5 975 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 CHCHD6Q9BRQ6 235 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 NICN1Q9BSH3 213 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 RAB9BQ9NP90 201 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 VPREB3Q9UKI3 123 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 HSF4Q9ULV5 492 aa12.88□□□□□ -0.35
UPF3A-208ENST00000484246 TMEM272A0A1B0GTI8 110 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 POM121CA8CG34 1229 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 F2RL2O00254 374 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 TMEM127O75204 238 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 HKR1P10072 659 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 RAB6AP20340 208 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 OMGP23515 440 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 DYNLT3P51808 116 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 LRRC75BQ2VPJ9 315 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 Q3ZCU0 254 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 HES5Q5TA89 166 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 BAIAP2L2Q6UXY1 529 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 LHFPL4Q7Z7J7 247 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 CREB3L1Q96BA8 519 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 SULT4A1Q9BR01 284 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 CHIAQ9BZP6 476 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 ZNF286AQ9HBT8 521 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 RAB22AQ9UL26 194 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 DSCAML1Q8TD84 2053 aa12.87□□□□□ -0.35
UPF3A-208ENST00000484246 TRBV6-6A0A0A6YYG2 114 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 BTBD17A6NE02 478 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 NAPSAO96009 420 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 HTR1DP28221 377 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 BLVRBP30043 206 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-208ENST00000484246 SCAND1P57086 179 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 ACTG1P63261 375 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 HLA-DRB5Q30154 266 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 NKAPLQ5M9Q1 402 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 C6orf201Q7Z4U5 140 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 C8orf31Q8N9H6 132 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 OR9G1Q8NH87 305 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 MRPL30Q8TCC3 161 aaKnown RBP12.86□□□□□ -0.35
UPF3A-208ENST00000484246 CENPOQ9BU64 300 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
UPF3A-208ENST00000484246 C12orf77C9JDV5 145 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 SDC2P34741 201 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 DYNC1I2Q13409 638 aaKnown RBP12.85□□□□□ -0.35
UPF3A-208ENST00000484246 SFXN4Q6P4A7 337 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 ZNF880Q6PDB4 577 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 DYNAPQ8N1N2 210 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 OR56B1Q8NGI3 324 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 ARL11Q969Q4 196 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 MMP28Q9H239 520 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 RIMS4Q9H426 269 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-208ENST00000484246 DPM3Q9P2X0 92 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 TRAPPC2LQ9UL33 140 aa12.85□□□□□ -0.35
UPF3A-208ENST00000484246 TRAV39A0A0B4J263 110 aa12.84□□□□□ -0.35
UPF3A-208ENST00000484246 LOC100506127A0A0U1RQW1 187 aa12.84□□□□□ -0.35
UPF3A-208ENST00000484246 UBE2QL1A1L167 161 aa12.84□□□□□ -0.35
UPF3A-208ENST00000484246 OOSP1A8MZH6 123 aa12.84□□□□□ -0.35
UPF3A-208ENST00000484246 LY6LH3BQJ8 138 aa12.84□□□□□ -0.35
UPF3A-208ENST00000484246 SOCS1O15524 211 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms