RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 SMAD7O15105 426 aaKnown RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 ENSAO43768 121 aaKnown RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 CA11O75493 328 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 CRTAPO75718 401 aaPredicted RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 RGS11O94810 467 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 TGFAP01135 160 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 TK1P04183 234 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 CSN2P05814 226 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 PPIAL4GP0DN37 164 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 ZNF44P15621 663 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 MGMTP16455 207 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 AMY2BP19961 511 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 RAB6AP20340 208 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 MEOX2P50222 304 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 RBM11P57052 281 aaKnown RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 GMFBP60983 142 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 DHODHQ02127 395 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 PAX5Q02548 391 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 COL10A1Q03692 680 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 MEF2CQ06413 473 aaPredicted RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 ZNF79Q15937 498 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 C2orf76Q3KRA6 126 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 Q3ZCU0 254 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 LBHQ53QV2 105 aaPredicted RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 Q6P435 159 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 LYPD2Q6UXB3 125 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 C1orf122Q6ZSJ8 110 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 RNF144BQ7Z419 303 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 SPAG16Q8N0X2 631 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 CIARTQ8N365 385 aaPredicted RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 CD177Q8N6Q3 437 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 OR4M2Q8NGB6 313 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 OR4M1Q8NGD0 313 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 SCARB1Q8WTV0 552 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 C15orf40Q8WUR7 153 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 SLC25A28Q96A46 364 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 TMEM186Q96B77 213 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 PHF21AQ96BD5 680 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 FAM3DQ96BQ1 224 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 MSI2Q96DH6 328 aaKnown RBP6.86□□□□□ -1.31
USP54-212ENST00000480210 CMTM3Q96MX0 182 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 C12orf57Q99622 126 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 ZNF251Q9BRH9 671 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 SEC22CQ9BRL7 303 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 TM2D1Q9BX74 207 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 TMEM59Q9BXS4 323 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 BARHL1Q9BZE3 327 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 SDHAF2Q9NX18 166 aa6.86□□□□□ -1.31
USP54-212ENST00000480210 AKAP9Q99996 3911 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 MEIKINA0A087WXM9 373 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 A0A0G2JK05 382 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 KIR2DS1A0A191URI9 304 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 hCG_1809904A0A1W2PP81 198 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 A0A1W2PPE2 198 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 RPS10-NUDT3A0A1W2PQS6 291 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 A0A1W2PR64 198 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 A0A1W2PRV1 198 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SHISA3A0PJX4 238 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 NAP1L6A6NFF2 107 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 MFSD2BA6NFX1 497 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 PCP4L1A6NKN8 68 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 F8VVB4 439 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 F8VWA3 439 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 FABP7O15540 132 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 ZNF737O75373 536 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 OR2H2O95918 312 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 VSIG8P0DPA2 414 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 NDUFB7P17568 137 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 FUT3P21217 361 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SLC6A1P30531 599 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 IL2RGP31785 369 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 CD81P60033 236 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 RPS27AP62979 156 aaKnown RBP6.85□□□□□ -1.31
USP54-212ENST00000480210 BTN1A1Q13410 526 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 EXOSC2Q13868 293 aaKnown RBP6.85□□□□□ -1.31
USP54-212ENST00000480210 CDNFQ49AH0 187 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 DCAF12L2Q5VW00 463 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 RAB12Q6IQ22 244 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SFXN4Q6P4A7 337 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 CLEC9AQ6UXN8 241 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 BTN2A1Q7KYR7 527 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 PDZD9Q8IXQ8 264 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 CMTM4Q8IZR5 234 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 FAM89BQ8N5H3 189 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 ZNRF1Q8ND25 227 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 LY6G5BQ8NDX9 201 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 TMEM185AQ8NFB2 350 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 OR56B1Q8NGI3 324 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SEH1LQ96EE3 360 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 Q96M66 194 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 C1orf147Q96MC9 270 aaPredicted RBP6.85□□□□□ -1.31
USP54-212ENST00000480210 GFI1Q99684 422 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 NUDT16L1Q9BRJ7 211 aaKnown RBP6.85□□□□□ -1.31
USP54-212ENST00000480210 DCTN5Q9BTE1 182 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SELENOIQ9C0D9 397 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 MMP28Q9H239 520 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 SLC25A32Q9H2D1 315 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 RAB9BQ9NP90 201 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 CTSZQ9UBR2 303 aa6.85□□□□□ -1.31
USP54-212ENST00000480210 INSIG2Q9Y5U4 225 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms